Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1048 ATGACGATTGACGATGAGAGCTCTATCTATGTTGGAGGTCTTCCTTACGATGCCACCGAAGATACCATCCGCACTGTCTTTGATTTGTATGGCGCCATTGTTGATGTCAAGATTATTAATGATCAACGGACTAGAGGAAAGTGCTATTGTTTTGTTACTTTCACAAATCCTCGATCAGCAATTGATGCGATCAATGATATGAATGGCAGAACCATTGATGGGCGTGTGGTTAAAGTAAATGGGGTGAGGACCCGAGGTGTAAGATCAAATTTTGGTAGAGAACATGTTCATCATAATAATACTGAGAGGAATGGTGACTGGGACCGTGGTAGAGATCGAGACCGAGATTATGATCGTGATAAGGATGGACACAGGACTCGAAATGGTGATTGGTCTCGAGAGCGTGATAGATCTCGAGAGCATAACAGGTCCCGAGACTTTGAGCATGATGGAGACAGAAGATATGAACATACACCTTATTATGATCAACCTAGGGAACCTATGCTAGATAAAGATCGAAATCGAGAGGGACATCAGGCAGATGATGACCAAGAACACGGCAGAGCACATTTTCAAGGTACAGAAAGAGAATATAACTTAGATTTGGATACAGATAGGAAGATGGATAGGACCAATGATTCTGACAGAAGTTTTGATGGGGATAGAAATGAACACTTCAGGAGAAATAATGGACTAAATGTTACGAAACAACATAGCGTGGATTTTTCATCAGACTCAAATGGCAATCACAATTACCAGATTGAAGAGCAATTGGAGAGGTCAACTCAAAGGCTTGGTCAACTAAAAAATGAgGTTTCTCAAATGGAAGAGAAGTTGGAAGGGAACAGACTTCTTGTTATAGACTTACAAAAGGATTCTAGGAAACTGGAGGATGCATTGATTAGTGCAAAGAAACACTCTTCATATCGTCAGATGCAGTTGACCAAGCTGCACAAATGTTTTGTACGAGTGAAAGATTACACAGAAAGACTTAAAAGCTGCGAAAAGGAACTTCAGGCTCTGGTTGATACTGTAATGTTAGAGAGTGATGGTGATGGTGTTGGCTTAAAGGATGAACAATACATAAATGGAAATATCTGA 1101 0.4042 MTIDDESSIYVGGLPYDATEDTIRTVFDLYGAIVDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRTRGVRSNFGREHVHHNNTERNGDWDRGRDRDRDYDRDKDGHRTRNGDWSRERDRSREHNRSRDFEHDGDRRYEHTPYYDQPREPMLDKDRNREGHQADDDQEHGRAHFQGTEREYNLDLDTDRKMDRTNDSDRSFDGDRNEHFRRNNGLNVTKQHSVDFSSDSNGNHNYQIEEQLERSTQRLGQLKNEVSQMEEKLEGNRLLVIDLQKDSRKLEDALISAKKHSSYRQMQLTKLHKCFVRVKDYTERLKSCEKELQALVDTVMLESDGDGVGLKDEQYINGNI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1048 366 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 364 - -
Sto12g1048 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Sto12g1048 366 CDD RRM_SF 9 80 - -
Sto12g1048 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Sto12g1048 366 Gene3D - 2 99 IPR012677 -
Sto12g1048 366 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Sto12g1048 366 SMART rrm1_1 8 80 IPR000504 GO:0003723
Sto12g1048 366 SMART rrm2_1 8 80 IPR003954 GO:0003676
Sto12g1048 366 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 364 - -
Sto12g1048 366 Coils Coil 251 285 - -
Sto12g1048 366 MobiDBLite consensus disorder prediction 88 229 - -
Sto12g1048 366 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1048 Sto-Chr12 6589933 6593021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1048 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 32.468 1.01e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1048 - - vun:114179118 481.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1048 12 6589933 6593021 Sto12g1048 12 6589933 6593021 ECH