Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1047 ATGGCTTCACCATCCGAACTAAGCCTTGATTGCAAACCTCATAGCTATTCCATGCTTCTGAAATCCTTTGGAGAACAGACACAGACAGATCATACCTACAAGCTTGAAGAGTTCCTTTCTCGCCTTGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTTCTCACAAACGCCATGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCCGAGCAAATCAAGGCACGAGGCCAGTACTAGAAGAATTCATACCCATCAAGCATTCTACCTCTGAAAGCTCTGAGAAGGCATCAAACGTTTCAGACAAGGCCAATTGGATGATATCTGCTCAATTATGGAGCCAAACAAATGAAGGAACCAAGCCACAATCCACAATTACATCATCACCCAAAGAAGCTGATATTGGGTTCAGTGTGAGCCCTAAGCTAGCTCTAGACAACAAGCAGAggaatggtggtggtggggccTTCCTTCCATTctcaaaagaaagaaacaactcATGCCAAAGTGGCTCCGCATTGCGGGTGATCCCTGAGTTAGCCCTTGCCTCTGTTGATAAAGAAATTGAAGAGAAGAAATGTGGGGAGGCAGAGAATAATGGAGTGTCATGTCCAAAGAGGGAAAATTCAGGTAAAGCTGGAGGCAATGGTGGAATGGCCATCGATCAAGGAAAAGGGGCTTCAGTTACATCTGAACCACAAACAACGAGCAACACCACCAATACCTCCAACACTACAAATAATAACCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCTGACCTGCACCGCCGATTTGTGAATGCTCTTCAGATGCTTGGTGGATCTCAAGTGGCCACACCAAAACAGATAAGGGAGCTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGACGACCCAGTCCAAGCCCACAAGCACCCGGGTCACCCGCACCCCAGCTCGTAGTCCTAGGAGGAATCTGGGTCCCACCCGAGTACGCCACAGCAGCAGCCGCTGCAGCCCACACAGGCGCCCCTGCCCTCTATAGTCCACACCCTACCTCCCACGCGCCGCCGCCGCACTATTGTACCACCGCTCCCGTGCACCAAGAATTCTACACGACTTCGCACCAGAGCTCGCCGGAATCTGACATTCGAGGGGGCGGAGACAGATCGGAGAGCATCGAGGACGGGAAGTCGGAGAGCAGCAGCTGGAAGGGAGAGAGCGGGGAGAACGATGGGGAGAGGAAAGGATTGGCGGCGCTGAGAGAAGAGGGAGAGGAGAGTAATGGGAGCGAGATCACTCTGAAATTCTAG 1356 0.4926 MASPSELSLDCKPHSYSMLLKSFGEQTQTDHTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFRANQGTRPVLEEFIPIKHSTSESSEKASNVSDKANWMISAQLWSQTNEGTKPQSTITSSPKEADIGFSVSPKLALDNKQRNGGGGAFLPFSKERNNSCQSGSALRVIPELALASVDKEIEEKKCGEAENNGVSCPKRENSGKAGGNGGMAIDQGKGASVTSEPQTTSNTTNTSNTTNNNQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAPGSPAPQLVVLGGIWVPPEYATAAAAAAHTGAPALYSPHPTSHAPPPHYCTTAPVHQEFYTTSHQSSPESDIRGGGDRSESIEDGKSESSSWKGESGENDGERKGLAALREEGEESNGSEITLKF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1047 451 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 379 451 - -
Sto12g1047 451 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 360 - -
Sto12g1047 451 Coils Coil 60 80 - -
Sto12g1047 451 MobiDBLite consensus disorder prediction 397 445 - -
Sto12g1047 451 MobiDBLite consensus disorder prediction 387 451 - -
Sto12g1047 451 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 261 316 IPR006447 GO:0003677
Sto12g1047 451 Coils Coil 35 55 - -
Sto12g1047 451 MobiDBLite consensus disorder prediction 201 265 - -
Sto12g1047 451 Gene3D - 260 318 - -
Sto12g1047 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 318 IPR017930 -
Sto12g1047 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 379 451 IPR044787 GO:0003700|GO:0006355
Sto12g1047 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 360 IPR044787 GO:0003700|GO:0006355
Sto12g1047 451 MobiDBLite consensus disorder prediction 234 261 - -
Sto12g1047 451 Pfam Myb-like DNA-binding domain 263 314 IPR001005 -
Sto12g1047 451 SUPERFAMILY Homeodomain-like 258 319 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1047 Sto-Chr12 6585206 6587432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1047 1 451 G2-like Transcription Factor Family AT2G03500 53.112 3.97e-142 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto12g1047 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1047 - - jcu:105639296 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1725 3 13381562 13384227 Sto12g1047 12 6585206 6587432 CCT
Sto12g1047 12 6585206 6587432 Sto12g1047 12 6585206 6587432 ECH