Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1033 ATGTCATCATCAAGTGGAATCGTTTGGAGCTATGAAGAAGAGAAGGCATTTGAGAATGCCATCGCTATGCATTGGACTGAGGAGGAGTCAGAAGAGCAATGGGAGAAGATTGCTTCCTCTGTTCCCACCAAAAACATGGAGGAATTGAAGCAACATTACCAATTTCTATTAGATGATGTGAGTGCAATAGAGGCGGGTCATATTCCTCTTCCAAACTACACTGCAGGAGAAGAAGCCACTTCTTCAAATAAGGAATTGCATGCTTCTAATTCCAAGGCTTCCACTTCGGATAATAAGAGATCCAATTGCAATTACCGAAGTGGCTTTTCTGGTATGGGACATGACTCATCTGCCCATACTGCTAAAGGAAGCTCTTCAAGATCTTCAGAACAAGAAAGGCGAAAAGGGATTCCATGGACAGAAGAAGAGCATAGGTTATTTCTACTTGGTCTTGACAAGTTTGGGAAGGGAGATTGGAGGAGCATATCAAGGAACTTTGTTATGTCTAGGACCCCAACTCAAGTAGCAAGCCATGCACAGAAGTACTTTATTAGGTTGAACTCCATGAATAGAGATAGGAGGAGGTCTAGCATCCATGACATAACAAGTGTGAACAATGGGGATGTTGCCACTAACCAGGCACCAATAACAGGACAGCACACAAGCACAAACCCTTCAACCACAATAGGTGTAGGACAATCTGTGAAGCATAGGGCTCATCAGCCCCATATGCCTCCTGGTTTGGGGATGTATGGAGCACCAGTAGGACACCCAGTGGCTGCTCCTCCTGGCCATATGGCATCAGCTGTAGGGACCCCTGTGATGCTTCCTCCTGGACCCCATCCTCATCCACATCCTCATGCTCATCCTCCTTATGTTGTTCCACTTGCTTACCCTATGGCATCTCCTACAATGCACAGATAA 924 0.4567 MSSSSGIVWSYEEEKAFENAIAMHWTEEESEEQWEKIASSVPTKNMEELKQHYQFLLDDVSAIEAGHIPLPNYTAGEEATSSNKELHASNSKASTSDNKRSNCNYRSGFSGMGHDSSAHTAKGSSSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVMSRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVATNQAPITGQHTSTNPSTTIGVGQSVKHRAHQPHMPPGLGMYGAPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHAHPPYVVPLAYPMASPTMHR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1033 307 PANTHER TRANSCRIPTION FACTOR MYBS1 5 305 - -
Sto12g1033 307 MobiDBLite consensus disorder prediction 75 125 - -
Sto12g1033 307 CDD SANT 9 57 IPR001005 -
Sto12g1033 307 SUPERFAMILY Homeodomain-like 8 61 IPR009057 -
Sto12g1033 307 MobiDBLite consensus disorder prediction 71 138 - -
Sto12g1033 307 PANTHER TRANSCRIPTION FACTOR KUA1 5 305 - -
Sto12g1033 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Sto12g1033 307 CDD SANT 138 183 IPR001005 -
Sto12g1033 307 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Sto12g1033 307 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Sto12g1033 307 MobiDBLite consensus disorder prediction 205 230 - -
Sto12g1033 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 185 IPR006447 GO:0003677
Sto12g1033 307 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Sto12g1033 307 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Sto12g1033 307 SMART sant 135 185 IPR001005 -
Sto12g1033 307 SMART sant 5 59 IPR001005 -
Sto12g1033 307 Gene3D - 137 189 - -
Sto12g1033 307 Gene3D - 2 70 - -
Sto12g1033 307 SUPERFAMILY Homeodomain-like 133 188 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1033 Sto-Chr12 6448702 6449963 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g1033 Myb_DNA-binding 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1033 - - gmx:778049 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1033 12 6448702 6449963 Sto12g1033 12 6448702 6449963 ECH