Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1031 ATGATTTGGAGCAGAGTGTTGAAGTCTGCTCAGTCCCTAGCTGTGCATTCCCTTCTCTTCGCTTTCACTCTTCTGCTCGTCCTCAAGCTCGATCATGTAATCTCCTGCTCTTGGTGGATAATCTTTTCCCCACTTTGGATGTTTCATGCGATTGTGGCTAGAGGAAGGTTCTCATTACCTGCACCATCAGTTCCACATAATCGACATTGGGCACCATGCCATGCTGTTGCTGCAATACCATTGCTTCTTGCATTTGAATTGCTCCTTTGTGTACATCTTGAGAGTTTTGATGTTCATGGTTTTGCAGCTGTCAGTCTGAAGATTGCATTCCTTCCCTTACTGATATTGGAAATCATTATTCTAATTGATAATTTCAGAAGGTGTAGATCATTAATGCCAAGGGATGAAGAAAACATGAACGATGAGGCAATATGGGAAACTCTTCCTCACTTCTGGCTTGCAGTCTCTATGGTCTTCTTTATTACTGCATCGCTCTTCACGCTCTTAAAACTCTCAGGTAATTTTTGGaaattatcatGTGATGTAGGTTCTCTAGGCTGGTGGgatttatttatgaattttggTGTTGCTGAGTTCTTTGCCTTTCTTGTATGTACAAAGTGGTCTAATCCAGTCATTCATAGAAATTCGTGCTCTAGAGAAGCCAGTTCATCTTCTACAGTGACCAGATATCTTAATTGGAATGGCAGTTCAATTGTTTCTTCAGAGGAAAACCAATGTCGGGAGAGAAACTGTGGCCTGCAAGACATAGGAGGTCATTTCATGAAAGTTGCAGTTATTGGATTTCAGATTCTTCTTTGTATGCGATTAGAGGAAACACCTGCTAATGCTAAATATATACCACTTCCAGTTGTTTTCTCTCCTCTTTTCCTCCTACAAGGTGCTGCTGTAATATTTGCAGCATCTAGGTTGGTGGAGAGACTCATAATAATGCTACGCAGTGGAGCTGTTGAAGGAATATATTTTAGATTTTCTGCAAGAGCTCATGAATGCATGGGGTTCCTGTACCATGGTTCTAAGTTTTTGGGTTGGTGGTCTATTGATGAAGAGAGTCGGGAAGAACAGGCACGGTTATTCAATGAAGGAGCAActggATATAGCACATTCAGTGATTATCCTCCTGAGATTGTAAAAACAATGCCTAAAAAGGATCTTGCCGAGGAGATCCGGAGACTCCAGGAAGCTCTTGGTAAGCAGACAGAAGTAACAAATTACAGCCAACAGGAGTTTGAAAGACTTCAAACTGAGAAATTGTTATGCAGAATTTGTTTTGAGGTGGAGATTAGTGTTGTATTGCTCCCGTGCAGGCACCGAATCCTTTGCAGAACTTGCTCAGATAAGTGTAAGAAGTGCCCAGTTTGCCGTGTCTCTATTAAGGAGAGCTTACCTGTATATGATGTTTAG 1425 0.4084 MIWSRVLKSAQSLAVHSLLFAFTLLLVLKLDHVISCSWWIIFSPLWMFHAIVARGRFSLPAPSVPHNRHWAPCHAVAAIPLLLAFELLLCVHLESFDVHGFAAVSLKIAFLPLLILEIIILIDNFRRCRSLMPRDEENMNDEAIWETLPHFWLAVSMVFFITASLFTLLKLSGNFWKLSCDVGSLGWWDLFMNFGVAEFFAFLVCTKWSNPVIHRNSCSREASSSSTVTRYLNWNGSSIVSSEENQCRERNCGLQDIGGHFMKVAVIGFQILLCMRLEETPANAKYIPLPVVFSPLFLLQGAAVIFAASRLVERLIIMLRSGAVEGIYFRFSARAHECMGFLYHGSKFLGWWSIDEESREEQARLFNEGATGYSTFSDYPPEIVKTMPKKDLAEEIRRLQEALGKQTEVTNYSQQEFERLQTEKLLCRICFEVEISVVLLPCRHRILCRTCSDKCKKCPVCRVSIKESLPVYDV 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1031 474 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 474 - -
Sto12g1031 474 SUPERFAMILY RING/U-box 418 469 - -
Sto12g1031 474 Coils Coil 389 409 - -
Sto12g1031 474 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 474 - -
Sto12g1031 474 Pfam Transmembrane Fragile-X-F protein 28 299 IPR019396 -
Sto12g1031 474 ProSiteProfiles Zinc finger RING-type profile. 427 462 IPR001841 -
Sto12g1031 474 SMART ring_2 427 461 IPR001841 -
Sto12g1031 474 Pfam Zinc finger, C3HC4 type (RING finger) 424 467 - -
Sto12g1031 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 472 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1031 Sto-Chr12 6433522 6440324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1031 5 474 C3H Transcription Factor Family AT1G73950 61.915 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1031 - - mnt:21405123 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1709 3 13164133 13179350 Sto12g1031 12 6433522 6440324 ECH
Sto12g1031 12 6433522 6440324 Sto12g1031 12 6433522 6440324 ECH