Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1011 atggGTTGCTCGTTTTCTGGGTTGAATGCTTTATACGACGCCGTCAATGGAGGAACGGATGTGTGGATCAATGAGAACCGATTCCGCATCGTCAGGCAGCTCGGCGAAGGTGGGTTTGCTTTCGTCTACTTGGTCAAGGAGGTTCTCGCTGACTCCTCATCCGCCTCTGCTGGCAGTGGACTTGCCAAGAAGCTCAAGGATTCCTCGCATGTCTCTGATGATGGAACTTATGCTATGAAAAAGGTCCTTATTCAGAACAGCGAACAATTGGAGTTGGTGAGGGAGGAGATCCGTGTCTCATCACTGTTCAATCATCCAAATTTGCTCCCACTTCTTGATCATGCAATCATTTCTGTTAAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATACTTGTTATTTCCGGTTCATTTAGATGGAACATTGTTTGACAATGCCAAAACAATGAAAGCCAAGAAGGAGTTCTATTCTACCTCTGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTCAAGCATATGCACAGTTTAGATCCTCCATATGCACATAATGATGTCAAACCTGGAAACATTCTCATAACACAGAGAAAAGGGCAACCACCTCTTGCCATACTGATGGATTTTGGTAGTGCTCGACCTGCCAGAAGGCAAATTCGTACCCGATCAGAGGCATTACAACTGCAGGAATGGGCAGCTGAGCATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCATGCTGATATAGACGAGAGGACTGATATCTGGTCATTAGGATGCACATTATATGCAATAATGTATGGCTTATCACCATTTGAATATGCACTTGGAGAATCTGGAGGAAGCCTGCAATTGGCCATTGTAAATGCTCAGGTCAAATGGCCAGCCGGACCTAAGCCTCCATATCCAGAAGCTCTTCATCAGTTTGTGACATGGATGCTTCAGCCCCAGGCTGCTGTACGGCCGCAGATAAATGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCTCTCCTTGA 1041 0.4544 MGCSFSGLNALYDAVNGGTDVWINENRFRIVRQLGEGGFAFVYLVKEVLADSSSASAGSGLAKKLKDSSHVSDDGTYAMKKVLIQNSEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKPTQETSWNHEAYLLFPVHLDGTLFDNAKTMKAKKEFYSTSDVLQIFRQLCAGLKHMHSLDPPYAHNDVKPGNILITQRKGQPPLAILMDFGSARPARRQIRTRSEALQLQEWAAEHCSAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGLSPFEYALGESGGSLQLAIVNAQVKWPAGPKPPYPEALHQFVTWMLQPQAAVRPQINDIIIHVDKLIAKFSP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1011 346 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 345 - -
Sto12g1011 346 ProSitePatterns Protein kinases ATP-binding region signature. 34 64 IPR017441 GO:0005524
Sto12g1011 346 SMART serkin_6 28 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1011 346 SUPERFAMILY Protein kinase-like (PK-like) 20 336 IPR011009 -
Sto12g1011 346 Pfam Protein kinase domain 58 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1011 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Sto12g1011 346 ProSiteProfiles Protein kinase domain profile. 28 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g1011 346 Gene3D Transferase(Phosphotransferase) domain 1 15 345 - -
Sto12g1011 346 PANTHER - 1 345 - -
Sto12g1011 346 CDD STKc_16 27 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1011 Sto-Chr12 6290045 6293903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1011 33 336 EF-hand Containing Proteins AT4G04710 25.566 1.67e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Sto12g1011 Pkinase 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1011 K08856 - rcu:8264572 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1011 12 6290045 6293903 Sto12g1011 12 6290045 6293903 ECH