Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1010 ATGGAGTATGGAGATGGGTACACATGCAATTGGGGTCGGCTGTGTGAGTCGTGCAGAGTCTCTGCCTCTACTCTGTACTGCCACACCGATTCGGCATTCTTGTGTTGTTCCTGCGACGAACGAATCCACGCGATGGGGTCTCCTTGTTGGCCCCACCACCGCGTGCAAATTTGCGGCGCGTGCGAGAACGCTCCGGCGGCGTTCACCTGCAAGGCGGACGATGCTTCACTCTGCATCAACTGCGACTTCGAGATCCACTCTGCGAACCCAATCGCCAGCCGACACAACAGAGTCCCCCTGTCTCCCCTGCCTCATGACGTGACCCCGGCAGCAACTACCACGACAGATCACGAGGAGCAgcgtaataataataataattacgaGGTTGTCGAGAACAACAAAAGCAGTCAGGAAATGGATGAGCGAGAGGCCGATTCGTGGTTGTTGCTCGATTCGGAGACTATAGAGAGTCAGGTGGTGGATGATGGGTTTATGTTTGGGGAAACAGAGGAAGAGGTGGGGGTTGTGGAGTGTGACTCGTCGAACAAGTTTCAGGAACATCCTCGTGATCACCAAACTCACAGCTTTTCCGAGGATCAGAGTGACAGCGTGGTGCCAATTCAGTCGGTGGAATCGCATCAGTCTCATCAGCAGTTgcagcaacaacaacaacaacatcaGCAGAATATGTACTTCAATATGGAGCAGGATCCATCAAGAGTGCCTTTCACTAATTACCCCTCAAATTGCCCCACTACCGGTGGTGTGGCATATATGGATGCGCACGTGCCAGTGGTGGGAAGGGCAAGGGGTAAGATAAGCGAGATGTGTGGAGGAGGGTACAGTAGGTATGGGAATCCAAACGGTACCGTTTCAATGCAAATGCAGTTTGCTGGGGAGATGAACAGGAAAGCAGGTGTGGAGAAAtatagagagaagaagaaatcgAGAAAGTTCGAGAAGAGAATTCGATATGCCTATAGGAAAGCCTACGCTGAGAAACGTCCCAGGGTTAAGGGCAGATTTGCTAAAAGACAAGACTTGCCCTCTTCTCTACCTcccaattaa 1068 0.4869 MEYGDGYTCNWGRLCESCRVSASTLYCHTDSAFLCCSCDERIHAMGSPCWPHHRVQICGACENAPAAFTCKADDASLCINCDFEIHSANPIASRHNRVPLSPLPHDVTPAATTTTDHEEQRNNNNNYEVVENNKSSQEMDEREADSWLLLDSETIESQVVDDGFMFGETEEEVGVVECDSSNKFQEHPRDHQTHSFSEDQSDSVVPIQSVESHQSHQQLQQQQQQHQQNMYFNMEQDPSRVPFTNYPSNCPTTGGVAYMDAHVPVVGRARGKISEMCGGGYSRYGNPNGTVSMQMQFAGEMNRKAGVEKYREKKKSRKFEKRIRYAYRKAYAEKRPRVKGRFAKRQDLPSSLPPN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1010 355 CDD Bbox1_BBX-like 14 57 - -
Sto12g1010 355 Pfam CCT motif 303 345 IPR010402 GO:0005515
Sto12g1010 355 PANTHER ZINC FINGER PROTEIN HD1-LIKE 4 347 - -
Sto12g1010 355 MobiDBLite consensus disorder prediction 198 227 - -
Sto12g1010 355 SMART bboxneu5 53 100 IPR000315 GO:0008270
Sto12g1010 355 SMART bboxneu5 10 48 IPR000315 GO:0008270
Sto12g1010 355 MobiDBLite consensus disorder prediction 183 227 - -
Sto12g1010 355 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Sto12g1010 355 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 347 IPR045281 GO:0009909
Sto12g1010 355 MobiDBLite consensus disorder prediction 183 197 - -
Sto12g1010 355 MobiDBLite consensus disorder prediction 336 355 - -
Sto12g1010 355 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Sto12g1010 355 CDD Bbox1_BBX-like 57 100 - -
Sto12g1010 355 Pfam B-box zinc finger 55 100 IPR000315 GO:0008270
Sto12g1010 355 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1010 Sto-Chr12 6286337 6287943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1010 11 345 C2C2-CO-like Transcription Factor Family AT3G02380 40.533 2.32e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Sto12g1010 zf-B_box 3.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1010 - - zju:107418912 252.292