Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1008 ATGATGAGCAGGAGAAAATACACGAAGCCGGCGGAAGCTTCGAGAAGATGGAAGAGATCAATCTCAAATTTGTGGAGCGGAAGCGGAAGCGGAAGCGAGGGAGGAGGAGGAGTATCGACGGCGCTGAAGCTGTACGAGGACCCGTGGACGATAAAGAAGACGCTGACGGAGAGCGATCTGGGAAGATCGAGCAGGCTACTGCTGGCGACGGATGTGGTGAAGAGTGAGATCTTGCCGATGCTGGGCGTGGACGACGCACGAGCCGCCGAGTCGGAGGAAGGCGCggcggttagggtttgggatctgGACTCCAAATCCATGCACCACTTGCTGCTCAAGCGCTGGTCTTCCTCCAAGAGCTACGTCTTCATCGGAAAGTGGAACCACGACTTCGTCCGCCGTAGGAACCTCCACAAAGGCGACCTCATTGCCTTCCACTGGGATCCTTCTCACTCTCTCTTCAACTTCTGCGGTGTAGTGTATGGCCGGAGAGAGGGGCTGATCAAGTACTCATCTCAACATCTTAGTCTATTATAG 537 0.5289 MMSRRKYTKPAEASRRWKRSISNLWSGSGSGSEGGGGVSTALKLYEDPWTIKKTLTESDLGRSSRLLLATDVVKSEILPMLGVDDARAAESEEGAAVRVWDLDSKSMHHLLLKRWSSSKSYVFIGKWNHDFVRRRNLHKGDLIAFHWDPSHSLFNFCGVVYGRREGLIKYSSQHLSLL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1008 178 Gene3D - 46 160 IPR015300 -
Sto12g1008 178 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 25 157 - -
Sto12g1008 178 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 25 157 - -
Sto12g1008 178 CDD B3_DNA 49 157 IPR003340 GO:0003677
Sto12g1008 178 SUPERFAMILY DNA-binding pseudobarrel domain 47 154 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1008 Sto-Chr12 6277987 6279006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1008 1 146 B3 DNA Binding Superfamily AT1G25560 25.850 2.24e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1008 - - pvu:PHAVU_009G204600g 196.438