Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1004 ATGACTCATGTTTTGGTTTACCCATTCCCCTCTTCCGGCCATGTCATACCCCTCCTCGACCTCGCAAAGCGTCTTGTCTCTCGTGGACTATACGTCACCGTTTTAATCACCCCAGCCAACTTTCCCTTACTCCAACCCCTGCTTTCCTCCCACGCTCCTTTTCTCCAATCCCTCCTCCTCCCTTCTCCCCAATTCCCCAATCCCAAACTAAACAGCCTCGTCCACGCCGTCGCCTCCATGCGCCAACTTCACTACCCAATCCTCCTTTCATGGGCCGCACAGGCCCATCCTTCTCCTCCCCTCGCCATCATCTCCGACTTCTTCCTCGGTTGGACCAACCACCTCGCACGTGACCTCCACGTCCCGCGTCTCGTCTTCTCTCCCTCCGGTGCCTTCGCCTTCTCCGTTTCCTTCTCTCTCTGGCGCCATCTCCCCCAAAATCACCACCCCGACAACCCCAATTCTCTCATTTCCTTCCCCAATATCCCTAATTCCCCTGTTTACCCCTGGTGGCAAATCAATCAGCACTACACGCAAAAGAAGAGAGGGGACCCAGAATGGGAATTACAAAGGGAAAATTTGCTCGCCAACCTTGCTAGCTGGGGCGTTGTGTTCAACACATTCACCCAGTTGGAGCAGGTTTACCTAGATCACATGAAAATAGAATTGGGACATGATCGAGTGTGGGCTGTGGGTCCCGTCTTGCCGCCCAAGGACGACTCAATTGGACCAACAAACAGAGGTGGGTCCAGCTCCGTGCCGTGTCACGACCTGCTGACGTGGCTGGACTCTCGTCGGGACAATTCCGTAATTTACGTCTGCTTCGGGAGTCGCACTGTTCTGAGCAGCCACCAAATGGAGGTGCTGACCAACGCTCTAGAGTTGAGTGGGGTGGACTTCATTTTATCGGTGAGGGATCCGGATGAGCGACACGTGGGTAGAGACAACGGCGTGATCCCGGAGGAGTTTGAGGATCGTGTAAGGGGGAGGGGTTTGGTGATTAAAGGATGGGCCCCACAACTGGCTATATTAGGACATAGAGCCGTGGGTTCGTTCTTGACCCACTGTGGCTGGAACTCGGTCCTGGAAGGAATGGCGGCCGGGGTGCTCATGGTGACGTGGCCAATGGGTTCGGATCAGTTTACGAATGCGGAGTTGGTGGTTGACAAGTTGGGTGCTGGGGTTCGAGCTGCGGAGGGGACGCAAAATGTTCCGGACGCGAAGGAATTGGGTACAATAATTAAAACCTCGTTGGAGCAGAATAGTGCTGAGAGGATAAAAGCCAAAGAGCTACAGAAAATGGCTTTGGAAGCTATCGAGCCAGAAGGGAGCTCCCAAAAACAATTAGATGCGTTGGACCAGTTCAGAGCTCCCATAGAAATGTCGTGCGTCTCGGACCCCACAAACAAGCgactcaaaacccaaatccaCGAGGACTCCAATCCCCTCCTTCACCTCCCACAGTCGCCCGACGATAACCAGTCTGATTGTTGTGGGATTTGCTACACTGCTTATGGGGTTTCAATTAGAGGTGAAATTGATTGCTGCAATCACTATTTTTGCTTCGTCTGCATTCTCGAATGGTCCAAGCATGAGTCTCGATGCCCTATTTGTCGCCAGAGGTTCTCCACCGTTCGCCTCCCGCCAAAGCCCGGCGTTTTCCCTTCCTCACGCCTCGTTAGAGTCCCTCTTCGTGACCAGGTTTACCATGTTAATGGAAATCTGACAACTGGTCCTGTTGATCCTTATGCTGAAACCCAGTGTAGTGTCTGTAATGGTAGGGAAGATGAAAGTTTCCTTCTACTATGTGATCTATGCAATACTGCTTCTCATACATACTGTGTTGGCCTGGGATATATTGTGCCTGAAGGTGATTGGTTTTGCCATGATTGTACTGTTTCTCGGGCAACCAAAGACAGTATTGAAATAGAGCATCAATATGATATGCCTACAGCTGAGTCAAGTGTAACAATCCTTGATATTGTTAGAGAACCAGACAGCCTGGTGATCAAAAGACCAAGACCATCTCCTTCTGTTATCCCTTTACCTGATAGGGTGAATAGAAACAAAGACAAAAATCCTGACTCAGGTGCAAGGACATTGCACAGATGTCGCAATGTGCAGCGTAGCATACAAGCATTGCGGGAAAATTGGAATGCTTTGAGAAGCGGTTCATTAAGGTTCTATTCCATTTCATCCGATTTTGGTGTTACCCATGATCGAAAACAAGCTTCTAGTTACTTGGTGCATGAAAAGTCAAGTCAACTGCATTCTTTGGCTTCTACAAGCCTTCAGCATTCCACAAGTCAAGGTAGCCCTTCTAGTAACACAACACATGAGAGAGCCTCCAAAGATGTCGACAAGGCTTGGAAAATGATGGAGAGAGCAAAGATGATGCAGAAGACTAAACAAAGAACTAGCATACTTCCAGAGGGACTCAATCATCCTTCAAGGAGTGCAGGTgcaggagcaggagcaggaccTAGAAAGGCATCAAGCATTCATTGTAATGACCAAGAACTGAAAGTTCAATTATCTAGTAGGTCCACTAGAATGGGCAAGCAGTATAACCATTCtagtttaaataataattcGGATAATCACTGGCTTCCAAAGTTGGAAGAGGAAAATCTTAGTAGGGTCACTTGTAAGGAGATGATACAGCATATTAGGGGCCAAGCTTCTCAAGGTACTCCCTGTCATGAAAATAGGGAGAGAAATTTTTCTAAGGAGCAAAGCAGGTCTTGTTTAATAACATCAGGAGGTTCAGCTTCCTCTCATGTCAAATGTCATAGTGTTTCTTCCTCTAGTAAGGAGGTGGATGAAAAAAAGAGGTTGGCTAAAAGTTTAGGGGATGTAAACACAAGTGAAGATGCAAAAAATGAGATCAAGTCTCTAGTCAAGCTCAATCTGAAGGTCCTAAATAAAGATAAACGATTAGGTGTTGATGCATTCAAGGAAGTTGCAAGACAGTCAACCCACACCATCTTGGCTTCATGTAGATCTGAGCACCCAAAGTCTGATACAATCTCCTCGAGCTCTGTGTGCAGCTACTGTGACAATCAACAGTTTCATAAATCCACCTTAATGCCTAATTGTTGCCGACAATGCTTTTACATGTTTGTAAAGAATGTTGTCAACTCCATTATGATGCAGAAATTGGATTGTGCTGGATCCTCACCAGGATAA 3189 0.4704 MTHVLVYPFPSSGHVIPLLDLAKRLVSRGLYVTVLITPANFPLLQPLLSSHAPFLQSLLLPSPQFPNPKLNSLVHAVASMRQLHYPILLSWAAQAHPSPPLAIISDFFLGWTNHLARDLHVPRLVFSPSGAFAFSVSFSLWRHLPQNHHPDNPNSLISFPNIPNSPVYPWWQINQHYTQKKRGDPEWELQRENLLANLASWGVVFNTFTQLEQVYLDHMKIELGHDRVWAVGPVLPPKDDSIGPTNRGGSSSVPCHDLLTWLDSRRDNSVIYVCFGSRTVLSSHQMEVLTNALELSGVDFILSVRDPDERHVGRDNGVIPEEFEDRVRGRGLVIKGWAPQLAILGHRAVGSFLTHCGWNSVLEGMAAGVLMVTWPMGSDQFTNAELVVDKLGAGVRAAEGTQNVPDAKELGTIIKTSLEQNSAERIKAKELQKMALEAIEPEGSSQKQLDALDQFRAPIEMSCVSDPTNKRLKTQIHEDSNPLLHLPQSPDDNQSDCCGICYTAYGVSIRGEIDCCNHYFCFVCILEWSKHESRCPICRQRFSTVRLPPKPGVFPSSRLVRVPLRDQVYHVNGNLTTGPVDPYAETQCSVCNGREDESFLLLCDLCNTASHTYCVGLGYIVPEGDWFCHDCTVSRATKDSIEIEHQYDMPTAESSVTILDIVREPDSLVIKRPRPSPSVIPLPDRVNRNKDKNPDSGARTLHRCRNVQRSIQALRENWNALRSGSLRFYSISSDFGVTHDRKQASSYLVHEKSSQLHSLASTSLQHSTSQGSPSSNTTHERASKDVDKAWKMMERAKMMQKTKQRTSILPEGLNHPSRSAGAGAGAGPRKASSIHCNDQELKVQLSSRSTRMGKQYNHSSLNNNSDNHWLPKLEEENLSRVTCKEMIQHIRGQASQGTPCHENRERNFSKEQSRSCLITSGGSASSHVKCHSVSSSSKEVDEKKRLAKSLGDVNTSEDAKNEIKSLVKLNLKVLNKDKRLGVDAFKEVARQSTHTILASCRSEHPKSDTISSSSVCSYCDNQQFHKSTLMPNCCRQCFYMFVKNVVNSIMMQKLDCAGSSPG 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1004 1062 Pfam PHD-finger 588 633 IPR019787 -
Sto12g1004 1062 ProSitePatterns Zinc finger RING-type signature. 516 525 IPR017907 -
Sto12g1004 1062 MobiDBLite consensus disorder prediction 801 835 - -
Sto12g1004 1062 CDD GT1_Gtf-like 3 438 IPR002213 GO:0008194
Sto12g1004 1062 MobiDBLite consensus disorder prediction 758 785 - -
Sto12g1004 1062 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 258 402 IPR002213 GO:0008194
Sto12g1004 1062 MobiDBLite consensus disorder prediction 685 699 - -
Sto12g1004 1062 PANTHER F18C1.6 PROTEIN 463 1055 - -
Sto12g1004 1062 Gene3D Glycogen Phosphorylase B; 3 445 - -
Sto12g1004 1062 Gene3D Glycogen Phosphorylase B; 256 440 - -
Sto12g1004 1062 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 463 1055 - -
Sto12g1004 1062 SMART PHD_3 587 632 IPR001965 -
Sto12g1004 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 646 IPR013083 -
Sto12g1004 1062 MobiDBLite consensus disorder prediction 758 779 - -
Sto12g1004 1062 SMART ring_2 498 538 IPR001841 -
Sto12g1004 1062 SMART ring_2 588 631 IPR001841 -
Sto12g1004 1062 MobiDBLite consensus disorder prediction 673 699 - -
Sto12g1004 1062 ProSiteProfiles Zinc finger PHD-type profile. 585 634 IPR019787 -
Sto12g1004 1062 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 555 IPR013083 -
Sto12g1004 1062 SUPERFAMILY RING/U-box 491 550 - -
Sto12g1004 1062 SUPERFAMILY FYVE/PHD zinc finger 582 636 IPR011011 -
Sto12g1004 1062 ProSiteProfiles Zinc finger RING-type profile. 498 539 IPR001841 -
Sto12g1004 1062 MobiDBLite consensus disorder prediction 894 913 - -
Sto12g1004 1062 Pfam Ring finger domain 497 539 IPR001841 -
Sto12g1004 1062 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1004 Sto-Chr12 6244488 6249148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1004 2 454 Glycosyltransferase AT1G73880 49.893 4.89e-148 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto12g1004 UDPGT 1.8e-16 CL0113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1004 - - gmx:100776416 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1004 12 6244488 6249148 Sto12g1004 12 6244488 6249148 ECH