Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g1003 ATGGAGCTTCCTCAAGCGCGTACTTTTGGAGCCGAAGGAAGGAAACCGACGCATGATTTTTTGTCACTGTATAGTCATTCAACTACCCAACAAGATCCCAGGCCAACTTCTCAAGGAAGTTACCTGAAAACCCATGATTTCTTGCAGCCACTAGAAGGAGCAGAAAGGAAGACGAATGCTAAGGTGGAAGAAGCAGGAGATCATGAAATATCATCAGTGGCTCAAAAGCAGCCACCAGCAGCACCATGTGTTGAGCACATTCTACCTGGAGGCATTGGGACTTACAGTATTAGCCACATATCGTATTTCAGTAACCACAGGATTCCAAAGCCAGAGGCATCATCCCCTTTCACTGTGCCTTCTCATCATGAACCTAGCAAGGATAGAAATGAAGACAGCTCCAACTGCACTTCATATACTTCCAGTGGTTTCAATCTGTGGGAAGAGTCTGCGGTTAAGAAAGGAAAGACAGGCAAGGAAAATGATGCGGCAGAGAAATCCACTGTACCAGAGTCTGCGGCGAAGTCAGGGCATTGGACTCTGACTGAGAGACCGACTCAGTTGTTTGCCAATAACAATTACAATAGCTTCAACTCTATCACCTCCTCTCAGAAAACTGGGCAGAAGAACCAGAGTTTTATGGAAATGATCAAATCCGCCAAGGATTGTGCTCAGGATGAGGAGCTAGACAACGATGAAGCACTCATTTTTAAGAAAGAATCCTCGATTACTCAAAGAGGGGACTTAAGAGTGAAAGTGGATGGGAAGAGCACTGATCAAAGGCCAAATACACCACGATCGAAACATTCTGCAACAGAGCAGCGTAGACGGAGCAAAATTAATGATAGGCAAATGTTAAGAGAGCTGATTCCACATAGTGACCAGAAAAGAGATAAGGCTTCTTTTTTGTTAGAGGTGATTGAGTATATTCAGTTTTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATACCAAATGTGGAATCAAGAGAAGGAAAAATTGACTCCATGGAGAAATAATCACAGGCCTTCAGAAAGCTATGATGACCAATCTCATGGCACAAATAGTGGGTCAGGCCCTTCTCCAAAATTACTTTTTGCTTCAAAGATTGGCGAGaagaatttcagcatctctccaACGGTTACTGGGAGTATACAGAATGAAGAAGCTGGCATGAGTACAGCAACTACCTTGAAGGCAATGGATCAACATCCTGGGATAACCAATAAGGCCATGTATATTCCTAACTCTTCACAGCCAAATTTCTATAGTCCTGGTCAAAGTGGTGGTCCAGGTGGAGTGGTGTCTCAGCTCACACACAGGCTGGCATCAGATGCGGAAAACACCACATGTAAACCCTCAATGCACTCTCAGAATTACTCTTGTGCTACAGAGGTGACCCCTGTTAGTGATAAGCTGAAAGAGAAGGACCTCACAATTGAAGGTGGTGCCATTAGCATATCAAGTGTCTACTCAAAAGGGTTGTTGGATACACTAACACAAGCACTGAAGAGTTCAGGGGTAGATTTGTCACAGGCTAGTATCTCAGTGCAAATTGAGCTTGCTAAGCAAGCAAACATCAAACCAATTGTACCAACATCTGGTGCTAAGGATGAAGTTCCTTCTAGCAATCAAGTGATGAAGCGCTCTAGAGGTGCTAGCATTGAGGGATCTGACCAATCAGTAAAGAAGCTTAAAGCATTCAGAAGTTGA 1713 0.4332 MELPQARTFGAEGRKPTHDFLSLYSHSTTQQDPRPTSQGSYLKTHDFLQPLEGAERKTNAKVEEAGDHEISSVAQKQPPAAPCVEHILPGGIGTYSISHISYFSNHRIPKPEASSPFTVPSHHEPSKDRNEDSSNCTSYTSSGFNLWEESAVKKGKTGKENDAAEKSTVPESAAKSGHWTLTERPTQLFANNNYNSFNSITSSQKTGQKNQSFMEMIKSAKDCAQDEELDNDEALIFKKESSITQRGDLRVKVDGKSTDQRPNTPRSKHSATEQRRRSKINDRQMLRELIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGSYQMWNQEKEKLTPWRNNHRPSESYDDQSHGTNSGSGPSPKLLFASKIGEKNFSISPTVTGSIQNEEAGMSTATTLKAMDQHPGITNKAMYIPNSSQPNFYSPGQSGGPGGVVSQLTHRLASDAENTTCKPSMHSQNYSCATEVTPVSDKLKEKDLTIEGGAISISSVYSKGLLDTLTQALKSSGVDLSQASISVQIELAKQANIKPIVPTSGAKDEVPSSNQVMKRSRGASIEGSDQSVKKLKAFRS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g1003 570 MobiDBLite consensus disorder prediction 537 557 - -
Sto12g1003 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 313 IPR011598 GO:0046983
Sto12g1003 570 Pfam Helix-loop-helix DNA-binding domain 266 314 IPR011598 GO:0046983
Sto12g1003 570 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 567 IPR044295 GO:0003700|GO:0006351|GO:0046983
Sto12g1003 570 MobiDBLite consensus disorder prediction 153 180 - -
Sto12g1003 570 CDD bHLH_AtBIM_like 263 338 - -
Sto12g1003 570 PANTHER TRANSCRIPTION FACTOR BIM1 1 567 - -
Sto12g1003 570 Coils Coil 310 330 - -
Sto12g1003 570 MobiDBLite consensus disorder prediction 57 80 - -
Sto12g1003 570 MobiDBLite consensus disorder prediction 532 570 - -
Sto12g1003 570 MobiDBLite consensus disorder prediction 1 41 - -
Sto12g1003 570 SMART finulus 270 319 IPR011598 GO:0046983
Sto12g1003 570 MobiDBLite consensus disorder prediction 21 41 - -
Sto12g1003 570 MobiDBLite consensus disorder prediction 248 294 - -
Sto12g1003 570 Gene3D - 262 336 IPR036638 GO:0046983
Sto12g1003 570 MobiDBLite consensus disorder prediction 335 365 - -
Sto12g1003 570 MobiDBLite consensus disorder prediction 113 139 - -
Sto12g1003 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g1003 Sto-Chr12 6233403 6237894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g1003 1 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.985 3.15e-119 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto12g1003 HLH 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g1003 - - gmx:100808016 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g1003 12 6233403 6237894 Sto12g1003 12 6233403 6237894 ECH