LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0992	atggGAAGGGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAGATAAACAGACAGGTGACATTCTCAAAGAGAAGGTCTGGTTTGCAGAAGAAAGCCCATGAGATCTCTGTTCTCTGCGATGCTGAAGTCGCTCTTATTATCTTCTCTACCAAAGGCAAGCTCTCCCACTACTCCACCGAACCCTGCATGGAAAGAATTCTTGAACGCTATGAGAGATATTCATACAGTGAAAGGCAGCTAGCTGCCACTACTGATCAGTCATCTAATTGTGAGGAAAACTGGACTCTGGAATACGCAAAGCTTAAGGCTAGGATGGAAGTGCTACAAAGAAATCAAAAGCATTTTATGGGAGAAGATCTGGAAGGGCTAAGCCTGAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATTCTGCTCTCAAACATATCAGAACACGCAAGAACCAACTCATGTATGAATCAATTTCAGAGCTTCAGAAAAAGGATAAGAAACTCCAGGAACAAAACAACTTGCTGGCTAAGAAGGTAACAGGGTGCCCAGAAGCAAGAGATCCTCATGACGAAGCAACTCTAAGTGAACCTCCACCTAGCTCGTCGCTTCTTCCCCCTTGGTTGCTTGCCCCCTTCgaatga	630	0.4444	MGRGRVELKRIENKINRQVTFSKRRSGLQKKAHEISVLCDAEVALIIFSTKGKLSHYSTEPCMERILERYERYSYSERQLAATTDQSSNCEENWTLEYAKLKARMEVLQRNQKHFMGEDLEGLSLKELQNLEHQLDSALKHIRTRKNQLMYESISELQKKDKKLQEQNNLLAKKVTGCPEARDPHDEATLSEPPPSSSLLPPWLLAPFE	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g0992	209	Coils	Coil	154	174	-	-
	Sto12g0992	209	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	PANTHER	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A	1	175	-	-
	Sto12g0992	209	Gene3D	-	13	94	IPR036879	GO:0003677\|GO:0046983
	Sto12g0992	209	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	CDD	MADS_MEF2_like	2	79	IPR033896	GO:0000977\|GO:0045944
	Sto12g0992	209	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	Coils	Coil	91	111	-	-
	Sto12g0992	209	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Sto12g0992	209	Coils	Coil	128	148	-	-
	Sto12g0992	209	Pfam	K-box region	87	175	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Sto12g0992	209	ProSiteProfiles	K-box domain profile.	91	181	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Sto12g0992	209	SUPERFAMILY	SRF-like	2	83	IPR036879	GO:0003677\|GO:0046983
	Sto12g0992	209	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	175	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g0992	Sto-Chr12	6183324	6187809	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g0992	1	175	MADS-box Gene Family	AT1G26310	68.571	4.98e-86	253

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Sto12g0992		K-box	1.2e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0992	K09264		-	pop:7484716	286.189

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto13g1882	13	26282438	26289605	Sto12g0992	12	6183324	6187809	ECH
	Sto12g0992	12	6183324	6187809	Sto12g0992	12	6183324	6187809	ECH