Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0989 ATGGAGTCTTGGAGTTTTGTTTCTGAAGAAAAAGGGTTTGTGTCCAACGATACACTCTCACCTCCCAACACACTTTCGAGAAGTAAAGGTTCCATCTTGGGTTGGGAATTGAAAACCCCATCTACTTTTTCCAACGACATCTTATCCTCAGGACAACAAAACATAGGAAATCAAAGTTTTGAGGAAATGGGGTTTCCAGAGATGTTGGGGAAACAATTGTCCTATGATCCAATTATTAGTGTTCCCACCAGGAAGCTCGAAGGTGGTCCTTTTATGGCTGCCCCCAATCCCATTTCCGGAGGAGAGGACTCCAATTCAAAGCTTTCAAGCTCCGTGATTGAATCTAACGGTCGGGAATCACTCATTGACTTGAAGCTTGGACGATTTCATGATCCCCGAGATGCTGCCTTGGACTCGACATTTTCCAAAGGAACCCCTATTTTGTCTTCTTCCGAATCATCGGCTCCGACCAAGAGAATACGAGGTTCGGGGTTTCAGTCACAAACTGCTTACTGTCAAGTCTATGGATGTAATAAGGATCTGAGTGCTTCCAAAGACTACCACAAGAGGCACAGAGTTTGTGAGGTTCATTCCAAAACCTCCAAAGTTATTGTGAACGGCATCGAACAGAGATTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGGTGAATTTGATGATTGTAAGCGTAGTTGTCGAAAACGCCTTGCGGGTCACAACGAGCGACGAAGAAAGCCACAAGTGGGAATTCACTCTGGAAAGGCTGGAAGATTGCTTCAGCCATATGGTGATAGCAGATTCCAGGGGACCATGCTAACAAGTGCATCTTTTATCTGCCAAGAGATACTCCCTAACGGCGTTTTGTGCTCTGATAAATATGGAACAAATGGCTGGTGGAGACCTATAAAACCCGAACATCGGACCGATTTTAGGCATCTCCCTGCTGTTCCTGTCACAAATGGACACACTCAGTCAAGACCTCTATTTCCTTCCTATAATGAAAGACAGTTTCCTTTTCTTCATGAAAATGGGGCTACATCCACTACAGGAAGCATCTTCTGTGAGAACAACAGTCAGTATCCACCCCCTCCTCCCATGGGACCGAATTCTGCAGCACAACCCTTATTCCAAGATACCTCCTTAAGAAGCGATGACTTCAATGTTTATGACACGACTCCGACTATTCAAGGACTATCTTCAGGAGTATTAGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCATAACTCTTCAAGCCAGTCCTCAGGAATTCCCTTGGTTATTCCAAGCAGCAGCCAGAGTCAGCTCACCCAAAACATCATAGGAGGAATAAGCTCGCAGGCTTCCACGAGTGGAGATTCGGATCGGTTTCCATTGGAGATGAATCCTAATGCTGCTGCTGATGGAAGCCATCTTAGTCCTGTGTTGATATCAGACAATAGCAACATTGTCAACTTTGAAATGGCAAGTGGGATCTTCCAAGGGCCAGATTTTGTGAATATGAAGGATGGCTTTTCTTGTGAAGATGTCCCAACTATTGACTTGCTTCAGCTGTCATCGCAGCTCCAGCGAGTCGAGCATCAGAGGCAATCCTCGCAGGCAAAGCAAGACAATGATTCTTCCTGCTCTCTTCGGACTGCTTGA 1650 0.4545 MESWSFVSEEKGFVSNDTLSPPNTLSRSKGSILGWELKTPSTFSNDILSSGQQNIGNQSFEEMGFPEMLGKQLSYDPIISVPTRKLEGGPFMAAPNPISGGEDSNSKLSSSVIESNGRESLIDLKLGRFHDPRDAALDSTFSKGTPILSSSESSAPTKRIRGSGFQSQTAYCQVYGCNKDLSASKDYHKRHRVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLGEFDDCKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYGDSRFQGTMLTSASFICQEILPNGVLCSDKYGTNGWWRPIKPEHRTDFRHLPAVPVTNGHTQSRPLFPSYNERQFPFLHENGATSTTGSIFCENNSQYPPPPPMGPNSAAQPLFQDTSLRSDDFNVYDTTPTIQGLSSGVLDSGCALSLLSSQSHNSSSQSSGIPLVIPSSSQSQLTQNIIGGISSQASTSGDSDRFPLEMNPNAAADGSHLSPVLISDNSNIVNFEMASGIFQGPDFVNMKDGFSCEDVPTIDLLQLSSQLQRVEHQRQSSQAKQDNDSSCSLRTA 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0989 549 MobiDBLite consensus disorder prediction 354 374 - -
Sto12g0989 549 MobiDBLite consensus disorder prediction 529 549 - -
Sto12g0989 549 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Sto12g0989 549 MobiDBLite consensus disorder prediction 1 25 - -
Sto12g0989 549 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Sto12g0989 549 PANTHER 1 PROTEIN, PUTATIVE-RELATED 43 547 - -
Sto12g0989 549 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Sto12g0989 549 Coils Coil 517 537 - -
Sto12g0989 549 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 547 IPR044817 GO:0003677
Sto12g0989 549 Pfam SBP domain 172 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0989 Sto-Chr12 6146434 6148774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0989 122 374 SBP-box Gene Family AT1G69170 43.446 1.73e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sto12g0989 SBP 5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0989 - - gmx:100777766 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1641 3 12380787 12386710 Sto12g0989 12 6146434 6148774 ECH
Sto12g0989 12 6146434 6148774 Sto12g0989 12 6146434 6148774 ECH