LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0983	CTGGTGATACAGAAAGTGGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCGTCTACACTGTCAGTTATTGCAGTTGTTATATATGGAGCTAATTTGACAATCAAAGGGTCCATGTCCGCCGGTGATCTCACATCTTTCATTCTGTATAGTCTCACAGTGGGATCTGCTGTATCTGGTCTGTCATCATTGTATACAGTAACTATGAAGGCTGCAGGTGCTAGCAGACGGGTATTTCAACTTCTGGATCGAGTCTCTTCCATGCCAAATGATCAAGATGGGGAAGTGGAACTAGATGATGTTTGGTTTGCCTATCCATCACGTCCTAGTCATATGATACTCAAGGGAATTACATTAAAACTGCAGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGCGGTGGAAAGTTCCCGGATAACTACAAGACCTTTGTTGGAGAACGTGGGGTACGGCTTTCCGGAGGGCAGAAGCAGAGAATAGCCATTGCTAGAGCCCTGCTTATGGACCCGAAAATTCTTCTCCTGGACGAAGCCACTAGTGCCCTGGATGCTGAAAGCGAATATCTAGTGCAAGATGCCATGGATTCTCTCATGAAGGGAAGGACAGTTCTAGTTATTGCTCATAGGCTGTCAACTGTAAAAAGTGCCAATATTGTAGCAGTTATTTCTGATGGTCAAATAGTTGAAAGTGGTACGCATGACGAGCTTCTCAGCAAGGATGGTGTTTATACTGCATTAGTCAGGAGACAACTACAAACAGCAAAGACAGAAATCTAG	777	0.4492	LVIQKVVGLFSGGLNAASTLSVIAVVIYGANLTIKGSMSAGDLTSFILYSLTVGSAVSGLSSLYTVTMKAAGASRRVFQLLDRVSSMPNDQDGEVELDDVWFAYPSRPSHMILKGITLKLQPGSKVALVGPSGGGKFPDNYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKSANIVAVISDGQIVESGTHDELLSKDGVYTALVRRQLQTAKTEI	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto12g0983	258	ProSitePatterns	ABC transporters family signature.	152	166	IPR017871	GO:0005524
	Sto12g0983	258	Pfam	ABC transporter	142	180	IPR003439	GO:0005524
	Sto12g0983	258	PANTHER	ABC TRANSPORTER B FAMILY MEMBER 25	5	136	-	-
	Sto12g0983	258	Gene3D	-	137	254	IPR027417	-
	Sto12g0983	258	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	14	249	IPR003439	GO:0005524
	Sto12g0983	258	Gene3D	ABC transporter type 1, transmembrane domain	1	86	IPR036640	GO:0005524\|GO:0016021
	Sto12g0983	258	PANTHER	ABC TRANSPORTER B FAMILY MEMBER 25	136	254	-	-
	Sto12g0983	258	SUPERFAMILY	ABC transporter transmembrane region	4	83	IPR036640	GO:0005524\|GO:0016021
	Sto12g0983	258	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	89	250	IPR027417	-
	Sto12g0983	258	Gene3D	-	87	136	IPR027417	-
	Sto12g0983	258	SMART	AAA_5	122	233	IPR003593	-
	Sto12g0983	258	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	1	69	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Sto12g0983	258	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	5	136	IPR039421	-
	Sto12g0983	258	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	136	254	IPR039421	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g0983	Sto-Chr12	6114864	6117831	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g0983	136	256	Calmodulin-binding Proteins	AT2G36910	62.602	9.64e-44	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0983	-		-	peq:110022536	363.999