Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0971 ATGGCCAAATCAGTTACCCCAGATGCGATTTCTATATTGCTGGCAAATCCTTCACCAGATTCCTCCTCGGAGCTCCCTGAGATCGTCGTTCAAGTTCTGGATCTCAAGCAAAGCGGTAATAGATACATGTTCACTGCTAGTGATGGAAAGATGAAGTTAAGGGCAATTCTCCCTTCAAATCAGAATTCTCAGGTCATTTCAGGGAGTATTCAGAATCTGGGTCTTATACGCATCGTTGACTACACTCTCAACGACATCccaaacaagtcagaaaaATATCTTATTGTCACAAAATGTGAACCGGTCTCTCCTGCACTTGAAATGGAGATTAAACAAGAGGGTCAAATCAAAAGTGAGGTGAAAAGTGAAGGAACTGGCATTATTTTGAGACCAAAGCAAGAAATAGTGGCCAAATCTGCAGCTCAGATTGTGCACGAACAACATCGAAACATGGCACCTACTGCACGAATGGCCATGACTCGCCGGGTGCATCCTCTTGTTTCCTTAAATCCTTATCAGGGCAATTGGACAATAAAGGTTCGGGTCACAAGCAAAGGAAACATGCGAACCTATAAAAATGCCAGAGGGGAAGGTTGTGTTTTCAATGTGGAATTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAACGAGGCTGCAAGGAAATTTTATGAGAGGTTTGCGCTGGGGAAGGTTTACTACATTTCCAAAGGAACTTTGAGAGTTGCTAACAAGCAGTTCAAAACTGTCCAAAACGATTATGAAATGACATTGAACGAGAATTCTGAGGTGGAAGAGGCAACCAATGAAGAAAGTTTTGTTCCAGAGACAAAATTTAAGTTTGTCCAGATTGATCAGCTGGGTCCTTTTGTCAATAGAAGTGACCTTGTTGATGTCATTGGAGTTGTTCAGAATGTGTCTTCAACAATGAGTATTCGAAGGAAGAGCAACAATGAGAGTATCTCAAAGCGTGATATTACTATTGCTGATGAAACAAAGAAGACAGTGGTTGTGTCTCTGTGGGGTGATCTTGCCACTAATGTAGGGCAAGAGTTGCTGGACATTGCTGATAAATCTCCATTAGTAGCAATCAAATCCCTCAGGGTTGGGGATTTTCAGGGTGTTTCCTTGTCAACTATTAGCAAAAGCACCGTTTTGATAAATCCTGATATACCTGAAGCCAAAAAGCTTAGAtcctgGTATGAGTCTGAAGGTAAGGATGCTTCAATGGCTTCTGTGGGCTCTGGCTCAAGTCCCATCTccaaaaatggaattaaatCAATGTACTCTGACCGTGTTTCACTTACTCATATAACCTCAAACAAATCCTTGGGGGAAGATAAGCCTGCGTTTTTCAGTATTAGAGGACATATAAGCTTTATCAAGCCTGACCAGACAATGTGGTACCGAGCCTGCACAACTTGCAACAAGAAAGTAACTGACGCCATTGGTTCTGGGTACTGGTGTGAAAGCTGCCAGAAAAATGTAGAAAGCAATTTAAGATACATCATGGTTGTAAAAGTTTCTGATGCAAGTGGAGAAGCTTATATCTCAGTCTTCAATGAAGAAGCCGAGGCGGTTGTTGGGTGTTCTGCTAATGAGCTAGATAATCTCAGATCACAGATGGGAGAAGAAAATTCATATCAAATGAAATTGAAACAAGCTACTTGGACCCCTCATCTTTTCCGTGTTAGCGTATCTCAAAACGAATATATGAACGAGAAGAGACAAAGGATTACAGCCCGAGCAGTTGCTCCTGTTGACTTTGCTGCTGAGTCAAGATTTCTCCTGGAAGAGATTTCGAAGATGAGAGTTTCTCAATAA 1830 0.4087 MAKSVTPDAISILLANPSPDSSSELPEIVVQVLDLKQSGNRYMFTASDGKMKLRAILPSNQNSQVISGSIQNLGLIRIVDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKQEGQIKSEVKSEGTGIILRPKQEIVAKSAAQIVHEQHRNMAPTARMAMTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYERFALGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEATNEESFVPETKFKFVQIDQLGPFVNRSDLVDVIGVVQNVSSTMSIRRKSNNESISKRDITIADETKKTVVVSLWGDLATNVGQELLDIADKSPLVAIKSLRVGDFQGVSLSTISKSTVLINPDIPEAKKLRSWYESEGKDASMASVGSGSSPISKNGIKSMYSDRVSLTHITSNKSLGEDKPAFFSIRGHISFIKPDQTMWYRACTTCNKKVTDAIGSGYWCESCQKNVESNLRYIMVVKVSDASGEAYISVFNEEAEAVVGCSANELDNLRSQMGEENSYQMKLKQATWTPHLFRVSVSQNEYMNEKRQRITARAVAPVDFAAESRFLLEEISKMRVSQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0971 609 Gene3D - 162 271 IPR012340 -
Sto12g0971 609 Gene3D - 417 605 IPR012340 -
Sto12g0971 609 Pfam Replication protein A OB domain 294 390 IPR031657 -
Sto12g0971 609 Gene3D - 276 416 IPR012340 -
Sto12g0971 609 Gene3D - 4 112 IPR012340 -
Sto12g0971 609 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sto12g0971 609 Pfam OB-fold nucleic acid binding domain 176 262 IPR004365 GO:0003676
Sto12g0971 609 CDD RPA1_DBD_A 165 268 - -
Sto12g0971 609 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Sto12g0971 609 CDD RPA1_DBD_C 437 604 IPR013955 -
Sto12g0971 609 CDD RPA1_DBD_B 298 404 - -
Sto12g0971 609 SUPERFAMILY Nucleic acid-binding proteins 163 272 IPR012340 -
Sto12g0971 609 SUPERFAMILY Nucleic acid-binding proteins 432 605 IPR012340 -
Sto12g0971 609 Pfam Replication factor-A C terminal domain 453 598 IPR013955 -
Sto12g0971 609 SUPERFAMILY Nucleic acid-binding proteins 281 409 IPR012340 -
Sto12g0971 609 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 604 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto12g0971 609 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 603 - -
Sto12g0971 609 PANTHER REPLICATION FACTOR A 1, RFA1 5 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0971 Sto-Chr12 6021644 6024854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0971 1 609 Core DNA Replication Machinery Family AT5G08020 70.213 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0971 K07466 - qsu:112017680 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0971 12 6021644 6024854 Sto12g0971 12 6021644 6024854 ECH