Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0967 ATGGCTTTCTTTGCTAGAGTTGGGAATATGCTTAGACAGGCTACAAATAAGCAGCTCAGTTCAGAATTACGTTCAACTCCATCAATTTTCCAGGCTATACGGTGCATGTCAACGGGTGCAAGTTCAAAGCTGTTTATAGGAGGATTATCATTTTCTACCGATGAGCAAAGTTTGAGGGAAGCTTTTGCAAAATATGGTGAAATAGTTGATGCAAGGATAATTATGGATCGTGATACTGGTAGATCTAGAGGATTTGGCTTTATTACTTTCACTTCAACTGAGGAGGCATCAAGTGCTATCCAGGCCCTGGATGGACAGGATATTCATGGTCGCAGGGTTAGGGTGAATTATGCTAATGATAGAACCCGTGGATTTGGTGGCGGCGGCGGTTTTGGTGGTGGCGGCGGTTTTGGTGGTTCTTATGGTAGTGCTCCATACGGTGCTGCAGCTGATGCTGGTGCTGGCTATGGAGGCGGTTATGGTAACCGATCCTATGGTGGTTCTGGTGCATATGGTGGCAATGCTGCTGGAGGTTATGGTGGTGGTGGATATGGTGGAGGAAGCTATGGATCAGCTGCTGGTGGCAGTTATGGTGGAAGTGGAACGAATTATGGGAATGAAGGCAACTTTACACGTAGTGGAGGTAGTGGAGGCTACGGCGGTGGTGACTATGCAAGTGGGAACACTTATGGTGGTGGCAGTAGCGGAGGCTATGGCGGCAACGATGGGAGCTTTGGTGTTGCTGGTGGTACTGGAGGTAGTGATAACTACGGAAGTGCTCCTAGTTTTGGTGGTGCTGCTGGTGGAGGTAGTGACAGCTTTGGCAGTCCTGCTGGTTTTGGCAGTACTGGGTCTACAGGTTCTGGCAGCAGCTTTGCCAGTGGATTCGATGGAAGCGGAGGACTGGACTTTGGCAGCAGTGGTCAATTTGATAACAAAAACATTGGAAATGTAGGTGGGGATGCTGGAGATTTTGGAAACTCGTTAGAGGGAAACTACAGGGACGATGATGATACTGGTGATTTTGCTAAAAGGGCTTGA 1041 0.4832 MAFFARVGNMLRQATNKQLSSELRSTPSIFQAIRCMSTGASSKLFIGGLSFSTDEQSLREAFAKYGEIVDARIIMDRDTGRSRGFGFITFTSTEEASSAIQALDGQDIHGRRVRVNYANDRTRGFGGGGGFGGGGGFGGSYGSAPYGAAADAGAGYGGGYGNRSYGGSGAYGGNAAGGYGGGGYGGGSYGSAAGGSYGGSGTNYGNEGNFTRSGGSGGYGGGDYASGNTYGGGSSGGYGGNDGSFGVAGGTGGSDNYGSAPSFGGAAGGGSDSFGSPAGFGSTGSTGSGSSFASGFDGSGGLDFGSSGQFDNKNIGNVGGDAGDFGNSLEGNYRDDDDTGDFAKRA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0967 346 SMART rrm1_1 43 116 IPR000504 GO:0003723
Sto12g0967 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Sto12g0967 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Sto12g0967 346 MobiDBLite consensus disorder prediction 306 346 - -
Sto12g0967 346 SUPERFAMILY RNA-binding domain, RBD 41 144 IPR035979 GO:0003676
Sto12g0967 346 Gene3D - 8 138 IPR012677 -
Sto12g0967 346 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 170 - -
Sto12g0967 346 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 170 - -
Sto12g0967 346 MobiDBLite consensus disorder prediction 330 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0967 Sto-Chr12 6001251 6003013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0967 42 167 Eukaryotic Initiation Factors Gene Family AT3G16380 32.540 2.71e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0967 K12741 - gmx:100799124 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0967 12 6001251 6003013 Sto12g0967 12 6001251 6003013 ECH