Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0966 ATGGCCGCCGCGGCTAGACCTCTCGTCACCGTGCAAGCCCTAGAAGGCGATATGGCCACCGATGCCCCCCCAACAGTTCCTATCCCCGATGTCATGAAGGCTTCGATTCGACCCGATATCGTCAACTTCGTTCACTCCAACATTTCCAAGAACAGCCGCCAACCATACGCCGTCAGCAAGCGTGCCGGCCACCAGACCTCCGCCGAGTCATGGGGTACCGGTCGTGCCGTGTCTCGAATTCCTCGTGTCCCCGGCGGTGGGACCCACCGCGCCGGGCAGGGTGCCTTCGGCAACATGTGCCGTGGCGGACGCATGTTCGCTCCTACCAAGACTTGGCGGCGCTGGCACCGTAGAATCAATGTGACTCAGAAGCGCCACGCCATCGTTTCGGCCATTGCTGCTTCGGCGGTCACTTCTCTTGTTGTGGCTCGAGGTCACCGGATTGAGTCTGTGCCGGAGATGCCTTTGGTCGTGAGTGATTCAGCTGAGGGTGTTGAAAAAACGAAGGACGCGATCAAGGTTTTAAAGCAGGTTGGTGCGTTTCCTGATGCTGAGAAGGCAAAGGATAGCCACTCGATCCGACCTGGTAAGGGTAAGATGAGGAATCGCCGATATATCTCTCGCAAGGGTCCTCTCATTGTGTATGGAACTGAAGGAGCTAAAGCAGTGAAGGCTTTTAGGAACATTCCTGGTGTTGAGGTTGCGAATGTGGAGAGACTGAATTTGCTAAAGCTAGCTCCTGGTGGTCATCTTGGGAGGTTCATCATTTGGACCAAATCGGCTTTTGAGAAGTTGGATTCTGTCTATGGGTCCTTCGATAAGCCAtctgagaagaagaagggttacTTGCTTCCAAGGTCCAAGATGGTCAATTCTGATTTGGCAAGGATTATCAATTCCGATGAAATTCAATCCGTCGTGAGACCGATTAAGAAGGAAGTCAAGAGGGCGCCTCTGAAGAAGAACCCACTCAAAAACTTGAATGTTATGTTGAAGTTGAATCCTTATGCCAAGACCGCTAAGAGGATGGCACTTCTTGCTGAAGCTCAGCGAGTGAAAGCAAAGAAGGAGAAACTCGATAAGAAGAGGAGCTCCGTCTCTAAGGTTAGCTACTTGTTTATAAGTTAA 1128 0.5106 MAAAARPLVTVQALEGDMATDAPPTVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRRWHRRINVTQKRHAIVSAIAASAVTSLVVARGHRIESVPEMPLVVSDSAEGVEKTKDAIKVLKQVGAFPDAEKAKDSHSIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFIIWTKSAFEKLDSVYGSFDKPSEKKKGYLLPRSKMVNSDLARIINSDEIQSVVRPIKKEVKRAPLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRSSVSKVSYLFIS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0966 375 PANTHER 60S RIBOSOMAL PROTEIN L4 2 372 IPR045240 -
Sto12g0966 375 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Sto12g0966 375 MobiDBLite consensus disorder prediction 54 96 - -
Sto12g0966 375 PANTHER BNAC03G35890D PROTEIN 2 372 - -
Sto12g0966 375 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Sto12g0966 375 SUPERFAMILY Ribosomal protein L4 14 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Sto12g0966 375 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Sto12g0966 375 Coils Coil 342 362 - -
Sto12g0966 375 MobiDBLite consensus disorder prediction 54 73 - -
Sto12g0966 375 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0966 Sto-Chr12 5999041 6000168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0966 2 368 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.924 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0966 K02930 - gmx:100779764 671.003