Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0961 ATGGCATCCGAGAAGCGGTGCCACTACGAAGTCCTCGGTCTCCAGCGAGATTCCACACCCGACGAGATCCGGTCGGCTTACCGGCGGCTTGCCCTTCAGCGCCACCCTGACAAGCTCGTCAAGTCCGGCTTGTCTCAAGCCGAAGCCACGGCTCAATTCCAGGAGCTTCAACACGCCTACGAGGTCCTTTCCGACCCCAAAGAGCGAGCATGGTACGATTCTCACCGGTCTCAGATTCTCTTTTCTGATCCCAACTCGGTCGGAAAATCGGTCCCTAATTCGTTCATCCCAGAcctgttttcctttttctccaATACCGTTTATTCTGGCTATTCGGACACCGGCAAGGGGTTCTATAAGGTGTATTCTGATGTTTTTGATAAAATTCACGCTAATGAAATTAACTTCGCAAAGAAATTAGGGTTAGGCATTGATGTGGTTAGACAAGCCCCTTTAATGGGCAATTTGGATAGTCCTTATGCTCAAGCGACAGCGTTTTACAATTACTGGTTGGGATTTTCTACGGTGATGGATTTTTGTTGGGTTGACGAGTATGATGTTATGGCTGGTCCCAACCGGAAGTCCAGACGGCTTATGGAGGAAGAGAATAGTAAGATCAGGAAGAAGGCAAAGAAGGAGTATAATGAGACGGTGCGGAAGTTGGCGGATTTTGTCAAGAAAAGGGATAAAAGGGTGATTGATATGAAAGTTAAGAAGaatatggagatggagaagaagaaagaggaggAGAGGGAGAGGAAGAAGCAGTTGGAGAAGGAGAGAAAGGAGAGAGCGATGGCATATGAAGAGCCTGACTGGGCCAAAGTGGAggaggatgaagaagatgaGGAAAGCTGGTTTGAGGAGGAGAGTAAGAGGAAGAATGATGATAATGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAATGGAAGAACCATGAACAATCCAAGAAGCATAAGGAGAAAGTTGCAGAATTTAGGAATTCActggatgatgaagaagaatatCAAGAGGATGTGGAAGAAGTAGGGGAGAATGAGAATTTGGAAAGTAATGGGGATGAAGTTGCGGTGAATGATGATCAACCAGGGAGCACTGATTATGAGATTGACGAATTAGAGGAGAGAGTTAGAGATGGCCTCAATGTTGATGAGGAGACAGGAATCGGGACTGAGTtgaatgatgaagaagatggacCTCTTAATGCCCAACATGAAAAAGAGGGGGAGAAGGCTGGTGTCTCAGTAGGttttgatgatgatggtggtggtggtgatgatgatgatgatgaagaattgGGTGTTCTTGAAGCTATGCTGGCTGGGCACAAGAGCAGAAAAACTGGTACTTCCAGGCAGGAGCACAAGGTTTCAGTAGTGACATCTCAtattgagaatgagaatgatgaGGGTGGCTTTATGGAATATGACAACCGAAAGGGTTCAAGAAAGAAACGTGGAACCAAAAAAGAGAAGGGTAGAAAAAATAGCGAAGAATCGAAGGTGACTACTGTCAACAGCGATTTTCAGAATGGGGGCAATATTGACGATGATACATCTCACACAGAAGAGTCTTCTCAATCTAACGTGCAAAATGATAGTAAGGGTAAAGAAAATGAGCAGGCAGGTAGAGATAAGAAGGCTTCAAATCAAACTGCTGATAAAAAAGGAACAGCAAAGGACACTAAGACCAATGCAAAAATTTCATCCAAATCAAGAAAAGCAAAGGTGACATCTAAGAATCTTAGCAATACCTGTGAGGCCTGTGGGGAGGAGTTTGATTCAAGGAATAGATTACATAAGCATCTGGGTGATACCGGACATGCCACGATAAAATCCACAAGGAAGCATAATTAG 1872 0.4076 MASEKRCHYEVLGLQRDSTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSVGKSVPNSFIPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKIHANEINFAKKLGLGIDVVRQAPLMGNLDSPYAQATAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRLMEEENSKIRKKAKKEYNETVRKLADFVKKRDKRVIDMKVKKNMEMEKKKEEERERKKQLEKERKERAMAYEEPDWAKVEEDEEDEESWFEEESKRKNDDNEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRNSLDDEEEYQEDVEEVGENENLESNGDEVAVNDDQPGSTDYEIDELEERVRDGLNVDEETGIGTELNDEEDGPLNAQHEKEGEKAGVSVGFDDDGGGGDDDDDEELGVLEAMLAGHKSRKTGTSRQEHKVSVVTSHIENENDEGGFMEYDNRKGSRKKRGTKKEKGRKNSEESKVTTVNSDFQNGGNIDDDTSHTEESSQSNVQNDSKGKENEQAGRDKKASNQTADKKGTAKDTKTNAKISSKSRKAKVTSKNLSNTCEACGEEFDSRNRLHKHLGDTGHATIKSTRKHN 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0961 623 MobiDBLite consensus disorder prediction 374 390 - -
Sto12g0961 623 MobiDBLite consensus disorder prediction 542 573 - -
Sto12g0961 623 MobiDBLite consensus disorder prediction 336 354 - -
Sto12g0961 623 Pfam DnaJ domain 8 73 IPR001623 -
Sto12g0961 623 SUPERFAMILY Chaperone J-domain 3 98 IPR036869 -
Sto12g0961 623 MobiDBLite consensus disorder prediction 403 420 - -
Sto12g0961 623 MobiDBLite consensus disorder prediction 452 487 - -
Sto12g0961 623 MobiDBLite consensus disorder prediction 426 440 - -
Sto12g0961 623 MobiDBLite consensus disorder prediction 274 294 - -
Sto12g0961 623 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Sto12g0961 623 CDD DnaJ 7 65 IPR001623 -
Sto12g0961 623 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Sto12g0961 623 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Sto12g0961 623 MobiDBLite consensus disorder prediction 507 521 - -
Sto12g0961 623 Gene3D DnaJ domain 1 87 IPR036869 -
Sto12g0961 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Sto12g0961 623 ProSitePatterns Zinc finger C2H2 type domain signature. 591 613 IPR013087 -
Sto12g0961 623 Gene3D Classic Zinc Finger 288 351 - -
Sto12g0961 623 Coils Coil 233 267 - -
Sto12g0961 623 SMART dnaj_3 6 68 IPR001623 -
Sto12g0961 623 SUPERFAMILY beta-beta-alpha zinc fingers 292 341 IPR036236 -
Sto12g0961 623 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Sto12g0961 623 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 618 IPR044648 -
Sto12g0961 623 SMART c2h2final6 589 613 IPR013087 -
Sto12g0961 623 SMART c2h2final6 300 324 IPR013087 -
Sto12g0961 623 MobiDBLite consensus disorder prediction 315 587 - -
Sto12g0961 623 PRINTS DnaJ domain signature 9 27 IPR001623 -
Sto12g0961 623 PRINTS DnaJ domain signature 27 42 IPR001623 -
Sto12g0961 623 PRINTS DnaJ domain signature 48 68 IPR001623 -
Sto12g0961 623 ProSiteProfiles Zinc finger C2H2 type domain profile. 589 618 IPR013087 -
Sto12g0961 623 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Sto12g0961 623 MobiDBLite consensus disorder prediction 315 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0961 Sto-Chr12 5973422 5975732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0961 3 618 C2H2 Transcription Factor Family AT1G74250 52.128 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0961 DnaJ 8.6e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0961 K09506 - gmx:100788305 777.704