Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0946 ATGCCTTGGCTTTTCCTCGCCCAATTCCCCTCCTTCGTTATCCGATCTGGATCTGTGTGGTGGCTCTTGATTGAatcaatggaagaagaagatcaaGTGGTGGTGGTGTTGAAACACGTGTGTAAATTCTGCAGCAAGAGCTTCCCTTGCGGTAGATCCTTGGGAGGTCACATGAGGTCACACATCACCAACactaacaataacaacaatattACCTCAGCTTCTGAAACAGAGGATAAGCTCCCAAGGAAGCTGAACACCAATGGCGGAAAGGTGGTGGCAGAGTACGATCTGAGAGAGAACCCGAAGAAGACGTGGAGATTCGCCGATTCAAGAAGCGAAGAAGCTTCGCAAGTACTAGTGACGGAGGATAAATTCTGCAAGGAGTGTGGGAAAGCGTTTCAGTCGTGGAAAGCACTGTTTGGTCACATGAAATGCCATTCCGAGAAAGAACGAGCTTCCGCCACCATAGAGGATCATCAAGATTCTTCTAGAATCGTCACGGATAGCCAATCGGACAACGAAGAAGCCACGGCCAATCATCCCAATCGAAGACGAAGATCCAAGAGACGCCGCACGAGAACGACGTCGTACATGGCTTCCAGTTCGTCTCTGTCTTTGGCGAATCATCCTTCGAATTCCTCCGTGTCTGAGGTGGAGCAGGAGCAAGAAGAGGTAGCTATGAGCTTGATGATGCTAAGTCGAGACGTAGGTCATTGGAATgccttcaatttcaatttcaatctcAACCTCAATTCTTCCACTCTCGCCGAATCCTCTGACAATAACAACTCTGCCTATTTCCGAACCAAAACCGAAAGGGAAAAAGTGAAATCCAAagagaacaagaagaagaagaagaaagcagaGATTCCAAACGGCGTCGTCAAGAACtgcaaagaaaagaagaagcagGAGGAGGAGCTCGAGTTCCAATCTGCATTGGAGGActccgaagaagaagaagaagaagagaagtcaAACTCAAATCAGAACAAGAGAGGGAAGTTCAAGTGTACTACTTGCAGCAAGATCTTCCACTCGTATCAAGCCTTAGGAGGGCACAGAGCGAGCCACAAGAAGATGAAAGGCTGCTCCACTGCTTCAAGAAACAACGAGAGCAGCGAGAACAGCATAGAAACGACAGACCTCAACAATAATGGATACCTGCTTCAAGTTCATCAACAACTCATAAACGACAACAATGACGACGAAACGACAACTACGAAGAAGAACAGAGGAGGGAATCACGAGTGTCCAATTTGCCTCAAGGTTTTCCCTTCTGGACAAGCCCTGGGTGGTCACAAGAGATCTCAtttagcagcagcagcagcaggagGAGGAGTGGAAATTAGAGAATTTCTTGATCTCAATCTTCCTGCTGATGCTACTACAGAAGAACACAGCCATGGTGAGAATAATTACAGACCATGGTACTTCAAGCAGGACCCTCCTCTGCTTGGCCTCATATCTAACTGA 1479 0.4246 MPWLFLAQFPSFVIRSGSVWWLLIESMEEEDQVVVVLKHVCKFCSKSFPCGRSLGGHMRSHITNTNNNNNITSASETEDKLPRKLNTNGGKVVAEYDLRENPKKTWRFADSRSEEASQVLVTEDKFCKECGKAFQSWKALFGHMKCHSEKERASATIEDHQDSSRIVTDSQSDNEEATANHPNRRRRSKRRRTRTTSYMASSSSLSLANHPSNSSVSEVEQEQEEVAMSLMMLSRDVGHWNAFNFNFNLNLNSSTLAESSDNNNSAYFRTKTEREKVKSKENKKKKKKAEIPNGVVKNCKEKKKQEEELEFQSALEDSEEEEEEEKSNSNQNKRGKFKCTTCSKIFHSYQALGGHRASHKKMKGCSTASRNNESSENSIETTDLNNNGYLLQVHQQLINDNNDDETTTTKKNRGGNHECPICLKVFPSGQALGGHKRSHLAAAAAGGGVEIREFLDLNLPADATTEEHSHGENNYRPWYFKQDPPLLGLISN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0946 492 Coils Coil 270 290 - -
Sto12g0946 492 MobiDBLite consensus disorder prediction 152 222 - -
Sto12g0946 492 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Sto12g0946 492 Coils Coil 302 324 - -
Sto12g0946 492 MobiDBLite consensus disorder prediction 195 222 - -
Sto12g0946 492 ProSitePatterns Zinc finger C2H2 type domain signature. 339 359 IPR013087 -
Sto12g0946 492 Gene3D Classic Zinc Finger 334 439 - -
Sto12g0946 492 Gene3D Classic Zinc Finger 36 147 - -
Sto12g0946 492 SUPERFAMILY beta-beta-alpha zinc fingers 39 147 IPR036236 -
Sto12g0946 492 MobiDBLite consensus disorder prediction 257 334 - -
Sto12g0946 492 MobiDBLite consensus disorder prediction 61 76 - -
Sto12g0946 492 MobiDBLite consensus disorder prediction 152 166 - -
Sto12g0946 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Sto12g0946 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Sto12g0946 492 Pfam C2H2-type zinc finger 127 149 - -
Sto12g0946 492 Pfam C2H2-type zinc finger 337 361 - -
Sto12g0946 492 Pfam C2H2-type zinc finger 417 441 - -
Sto12g0946 492 Pfam C2H2-type zinc finger 39 61 - -
Sto12g0946 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 337 364 IPR013087 -
Sto12g0946 492 MobiDBLite consensus disorder prediction 286 311 - -
Sto12g0946 492 MobiDBLite consensus disorder prediction 61 86 - -
Sto12g0946 492 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 492 - -
Sto12g0946 492 SUPERFAMILY beta-beta-alpha zinc fingers 337 439 IPR036236 -
Sto12g0946 492 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Sto12g0946 492 SMART c2h2final6 337 359 IPR013087 -
Sto12g0946 492 SMART c2h2final6 39 61 IPR013087 -
Sto12g0946 492 SMART c2h2final6 125 147 IPR013087 -
Sto12g0946 492 SMART c2h2final6 417 439 IPR013087 -
Sto12g0946 492 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 27 492 - -
Sto12g0946 492 ProSitePatterns Zinc finger C2H2 type domain signature. 419 439 IPR013087 -
Sto12g0946 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 417 444 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0946 Sto-Chr12 5867785 5869367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0946 315 461 C2H2 Transcription Factor Family AT2G45120 41.250 4.62e-27 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0946 zf-C2H2_6 2.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0946 - - gmx:102669916 336.265