Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0945 ATGGCAGTAGAAGTTGGCGTGGCACACGGCTCTGACCAACTTGGAAATCCGGGCTTGTATGCCTTCGTCCATTCCGATTCTGCTCACGCAGGTCCAACTACCAATTCTCTCGATTCCAATGCAGATGCTCCAAATTGGATCGTCAAACATGTTGCTCCTATGAGATATGAAGCCGCTGCCGAAACTTCTCTTGGGACTGCAGCTGCGGCCACAAGTTTTCCTTCTGCATGTAATGAAAGCTCGGAATATCATCTTTTGCCCAATGTTACCCCAGTGGTGTTCCCTAACCAAACCAAGGTCAACAAAACAATGCAATGTGAGGTTTGCAAAGTCGATTGCAATAACAAAGATGTGTTTGAAAAGCACATATTAGGAAAGAAGCACAAGAGTAATTTGAAGTTGCTGAATAATCCCACTAATACTGTAGTACCGGGAACCTCTCATGCGACTTTACAAACTCAACTGAGTGGTGTCCAGGGACAAGAGTTATTTGGTGCTGTAGGCAAGGAGTTAGAGTTTAAGAAGCAGAAGCTTTTGAGTGGTGGTGCAGCAGTTGATTCAGTGAGAGTTTGCGCAATATGCAACATTGCTTGCAATAGTCAAGAAGTGTTTAACAAACATATAACTGGGAAAAAGCATGCTGCTCAGGTTGGCTTGATGTCTGATAATGGGATTGGTCCTTATCTTGCTGCATTTAAGCGTCAAGGCTTTGGTCCTTGGAAAAAGCCcccaaagaaaatcaagtttactcAACCTCTATGGTGTGAAGTCTGCAAGATCAATTGTAATAGCAGGGATGTATATATCACACACTTATCTGGGAAGAAGCACTTGAAGAACCTCGAGAAACTATCAAACTCAAAAAGTGTTGCTGATGGTTCCATTGAGTCAGTTGTAACATCAAATGCTTTGCAACCTGGAACCAATGCAGTAATCGGGCCCCAGGAAAAGCCAGACTCTAGTAAACATGAAGAGATAAATTCATATAAACCAGATGAGGCAGTCATGTCAGAGGATATTGAGACAAAGAAACTTAAACTTGTACAAGGTGGGGTAGCAGCAACTTCTATTAAATTCTGCACTCTATGCAATGTGGTGTGCAACAGCCAAACGGTTTATGATTTTCACCTTTCTGGGCAGAAACACGCCGCTATGGCGAAGAAGCAGGCAGGGTCAACTACTAGTTGA 1188 0.4259 MAVEVGVAHGSDQLGNPGLYAFVHSDSAHAGPTTNSLDSNADAPNWIVKHVAPMRYEAAAETSLGTAAAATSFPSACNESSEYHLLPNVTPVVFPNQTKVNKTMQCEVCKVDCNNKDVFEKHILGKKHKSNLKLLNNPTNTVVPGTSHATLQTQLSGVQGQELFGAVGKELEFKKQKLLSGGAAVDSVRVCAICNIACNSQEVFNKHITGKKHAAQVGLMSDNGIGPYLAAFKRQGFGPWKKPPKKIKFTQPLWCEVCKINCNSRDVYITHLSGKKHLKNLEKLSNSKSVADGSIESVVTSNALQPGTNAVIGPQEKPDSSKHEEINSYKPDEAVMSEDIETKKLKLVQGGVAATSIKFCTLCNVVCNSQTVYDFHLSGQKHAAMAKKQAGSTTS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0945 395 SUPERFAMILY beta-beta-alpha zinc fingers 356 389 IPR036236 -
Sto12g0945 395 SUPERFAMILY beta-beta-alpha zinc fingers 185 217 IPR036236 -
Sto12g0945 395 Gene3D Classic Zinc Finger 242 289 - -
Sto12g0945 395 SUPERFAMILY beta-beta-alpha zinc fingers 85 135 IPR036236 -
Sto12g0945 395 PANTHER ZINC FINGER RNA-BINDING PROTEIN 232 391 - -
Sto12g0945 395 PANTHER ZINC FINGER RNA-BINDING PROTEIN 36 216 - -
Sto12g0945 395 SUPERFAMILY beta-beta-alpha zinc fingers 249 284 IPR036236 -
Sto12g0945 395 PANTHER - 36 216 - -
Sto12g0945 395 PANTHER - 232 391 - -
Sto12g0945 395 Pfam Zinc-finger of C2H2 type 105 128 - -
Sto12g0945 395 Pfam Zinc-finger of C2H2 type 254 277 - -
Sto12g0945 395 Pfam Zinc-finger of C2H2 type 191 213 - -
Sto12g0945 395 Pfam Zinc-finger of C2H2 type 359 382 - -
Sto12g0945 395 Gene3D Classic Zinc Finger 338 390 - -
Sto12g0945 395 Gene3D Classic Zinc Finger 168 219 - -
Sto12g0945 395 Gene3D Classic Zinc Finger 92 135 - -
Sto12g0945 395 SMART ZnF_U1_5 355 389 IPR003604 GO:0003676|GO:0008270
Sto12g0945 395 SMART ZnF_U1_5 186 220 IPR003604 GO:0003676|GO:0008270
Sto12g0945 395 SMART ZnF_U1_5 250 284 IPR003604 GO:0003676|GO:0008270
Sto12g0945 395 SMART ZnF_U1_5 101 135 IPR003604 GO:0003676|GO:0008270
Sto12g0945 395 SMART c2h2final6 253 277 IPR013087 -
Sto12g0945 395 SMART c2h2final6 189 213 IPR013087 -
Sto12g0945 395 SMART c2h2final6 104 128 IPR013087 -
Sto12g0945 395 SMART c2h2final6 358 382 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0945 Sto-Chr12 5863131 5866822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0945 180 385 C2H2 Transcription Factor Family AT5G61190 30.097 2.52e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0945 - - aprc:113848135 408.683