Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0939 ATGCTCCATCGTTTGAGGAAGAGCATGCTTGAGAGAGATTGGGCTCTCTTGATTGTTGATGAATCTCATCATGTACGATGTACGAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTCCTTGATGTTGCTTCAAAAGTCAAGCGCATAATACTGCTATCTGGGACCCCTTCTTTGTCAAGGCCTGGACTGCTGGGGAAGAATAAATATGAGTTTGCAAAAACTTATTGTGATTATAAATATTTCAAGGTTATTCAAGGCAAAGTTTTTGCGATAAGGCGTCTGAAGGAACATGTGCTGCTACAATTACCACCAAAACGGCGGCAAATTATAAGGTTGTTGTTGAAGAGATCAGATTTAGTTTCTGCAAAAACTGCAGTTGGAAAGTTTAATGTCGACGCTATAAAAAATTCCAATGAAGACATGACTTTGAAAAGTTTGGATGAGGCTGTGGTTGGGGTATTGAACAGTGATACTTCCAAAAGTTCCACCGAAGATGTGACTTTGGAAAATTTGGATGAACCTGATGGGAAGCTCTCCTACCAGGAGCTTGGAATTGCAAAGCTTTCTGGGTTTTGTGAATGGCTTTCTCTCCATCCAGTTGTTGTGGAGTCagaaaatgcttcaaaaatgataatttttgcTCATCACCACAAAGTTCTTGATGGAGTGCagGAGTTTATATGTGAGAAAGGGATTGGTTTTATCCGTATTGATGGAAATACACTTGCCAGAGATAGGCAGTCAGCAGTGGTGTCATTTCGATCAACACCAGAGGTTAAAATTGCGATAATAGGCATTTTAGCAGCAGGATTTGGACTTGATTTCTCATCAGCTCAAAATGTTGTGTTCTTGGAGCTTCCTCAGTGCCCATCTCTGATGCTTCAGGCCGAGGATAGAGCTCACCGACGAGGGCAAACGAATGCAGTCAATGTATACATCTTCTGTGCAAAGGATACATTGGATGAATCGCATTGGAAAAATTTGAACAAAAGTTTATATCGTGTTTCATCTACAACAGATGGCAAATATGATGGAATGAAAGAAATACAGGTTGAAGGTGTTTCTTATCTAGACACATATGTCAAATCTTATAGTATTGATGAAGAGCATTCTGCTTCTAATGAAACTTCAGAACAGGTGAAAGCGTTACCGGATTGTGCCTCAGTCTCGAATTTGCAACCTTTCCAGGCTGATAAGGTTCCCTGCCTGGAATTAGGCGTTGCTTCTATTCTGGATGGAAATCTAGATGTAGATGGTTTTGATGCTGAGGATGGATGCTCAGGTTTTGAGGATAAGAAATCATCTCCGACAATAAAAGCAGATGACTACCAACCTAATCAGCAAGTTGAAGCAGATGAAAATTCCTCTAATCAAGTTGAATCTCTACGATTTGAGGTGAGCTCATACACTGGAAGGGTCCACTTGTATACTTGCACTCTGGGTACAGATACAAGACCAAGACCACTTTCTAAAAATTTCCGACCTGAGGAACTTGAGTTGCTAAGTTCCCTTGCTGCTGATGATGAAAGGATAAAAGATATTTCCATCAAGGACAAACCCATTTATATGCATGCTCTTTTGGAATTTTCAAATGAATGGAAGAAATTAAGGCCAATTGAGCGGAAGAAATTACTGGGTAAACCGTTACAACTTCCCTTGGCTGTTGAATTGTGCTACTTGAGTGAAAGCAATAGCCACAACAAGAAGGGATTATTAAATGGTGGAAGTAAACGACGCATGACACCTTTAATAGAGATTAGTCATCCTTTACCATCAGATGCCATTTGGAAAAAGGTTTATTTGCGAAGTGGCAATGGTAAGAAGGAGAAAGAATACACTCAAGGTTGGACTTCAACAGATGAACCACTCTGTAAACTTTGTCAAAAGAGATGCATGGGTAACAATGCCAAGACACCTGATTTTTTTGAAGATCTTTTCTGTAACCTGGTCTGCTATGAAGAATATCGCATCAGAACAAGTAACAAATTCCTTCGTCAGGCAAGAACTTTCATCATACTAAAAGAACTTTTTGAAATTGAACATGGTGTGTGCTCAAATTGTCATCTAGACTGTCATAAACTAGTTGAGCATATAAAGCCTTTGTCATTGGCAAGGCGACGAGAGTACGTTGAGAAAGTGGCCCCAAAAGTGGCTATGCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAACGCATGGCATGCAGATCATATTGTTCCAGTATATCAAGGCGGAGGCGAATGTAGACTGGAGAATATGAGGACCCTTTGTGTTGCTTGTCATTATGACGTTACTTCAGCACAATGTGCTGAACGACGCAAAGAAAGAGCAAAGGCCAAGAAACAACTTAAACTAGTAATGAGTGAGTTGAAAAGTGGTCAGATGACGGACGCCACAGACTCTAATATTAAGgaGCATGGGCTTCTTGAGGTACAAGGAGATGGCATTGAGGATGAGCTTATAGTCAATGTGCCTGGAAGTGCCTATTCTGTAGATCCTGTGAATGTGATGTCATATCTTGGAGAAAAAGCGAGTTGA 2553 0.4019 MLHRLRKSMLERDWALLIVDESHHVRCTKKTSEPGEIKAVLDVASKVKRIILLSGTPSLSRPGLLGKNKYEFAKTYCDYKYFKVIQGKVFAIRRLKEHVLLQLPPKRRQIIRLLLKRSDLVSAKTAVGKFNVDAIKNSNEDMTLKSLDEAVVGVLNSDTSKSSTEDVTLENLDEPDGKLSYQELGIAKLSGFCEWLSLHPVVVESENASKMIIFAHHHKVLDGVQEFICEKGIGFIRIDGNTLARDRQSAVVSFRSTPEVKIAIIGILAAGFGLDFSSAQNVVFLELPQCPSLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLYRVSSTTDGKYDGMKEIQVEGVSYLDTYVKSYSIDEEHSASNETSEQVKALPDCASVSNLQPFQADKVPCLELGVASILDGNLDVDGFDAEDGCSGFEDKKSSPTIKADDYQPNQQVEADENSSNQVESLRFEVSSYTGRVHLYTCTLGTDTRPRPLSKNFRPEELELLSSLAADDERIKDISIKDKPIYMHALLEFSNEWKKLRPIERKKLLGKPLQLPLAVELCYLSESNSHNKKGLLNGGSKRRMTPLIEISHPLPSDAIWKKVYLRSGNGKKEKEYTQGWTSTDEPLCKLCQKRCMGNNAKTPDFFEDLFCNLVCYEEYRIRTSNKFLRQARTFIILKELFEIEHGVCSNCHLDCHKLVEHIKPLSLARRREYVEKVAPKVAMRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECRLENMRTLCVACHYDVTSAQCAERRKERAKAKKQLKLVMSELKSGQMTDATDSNIKEHGLLEVQGDGIEDELIVNVPGSAYSVDPVNVMSYLGEKAS 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0939 850 Pfam HNH endonuclease 736 767 IPR002711 GO:0003676|GO:0004519
Sto12g0939 850 Gene3D - 650 794 - -
Sto12g0939 850 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 197 351 IPR001650 -
Sto12g0939 850 CDD HNHc 730 770 IPR003615 -
Sto12g0939 850 MobiDBLite consensus disorder prediction 440 458 - -
Sto12g0939 850 SMART helicmild6 222 305 IPR001650 -
Sto12g0939 850 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 1 792 - -
Sto12g0939 850 MobiDBLite consensus disorder prediction 429 458 - -
Sto12g0939 850 CDD SF2_C_SNF 206 316 - -
Sto12g0939 850 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 1 792 - -
Sto12g0939 850 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 75 IPR014001 -
Sto12g0939 850 Pfam Helicase conserved C-terminal domain 204 305 IPR001650 -
Sto12g0939 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 357 IPR027417 -
Sto12g0939 850 Gene3D - 2 100 IPR038718 -
Sto12g0939 850 Gene3D - 101 388 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0939 210 358 RAD5 or RAD16-like Gene Family AT1G11100 34.437 2.32e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0939 K25861 - gmx:100788690 1134.78