Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0937 ATGGAAAATAAGCTCAAGCAAAGAAGAGTCTCATTTTCTGATCATccagcagaagaagaagaaggattcCTAAGGCAAAAAATTGAGGATGATGGTATAATCAGAGATAATGAGCATGGAACTGCAATTGCAGCTGCTGTATTTGCCATTCATTCGCAAGAACAAAGAAAGTTGCTTAAGATGATGAGAGAGGGCTCTGTATCTTCAAGGACTCCAACTATGAGAAGACAAGAAGAAAGCATATCTAGGAGGCCAAGTTTTGGAAGGAGTTCAAAGAAAAAGTCTTTTGGACAGGACCAAGAAGGATCATTTCCTGTTAGACTTTCAAGTGCTGTACAATCTCCAAGGCATATATCTCCCTTAGCCGGATTTCAAAAGCAGAAAGAGAGTCATATTCCCATTCCCATACAATGCAATAATACAAACTACTCCAGAGCAGAATCATGGAAAAAGGCCAAGATAGAAAAGATTCAAAAGCGGTATGAGAAGATCAAGTTTAAAATTCTTTTCTGGGAGagtgagaagaagatgaaggccAAACTTCACATGGATAGGAAAAAGAAGATGAAAGCACCAAATTTGACAGCCAACCTTTCAAAATTAGAAGATTTTGACGATACAAAAGCTGTGAATCAAGGAATCAGAACAGAACTCCCCATTCATTTCATTTCCTCTTTGATGATACTGTCATGTCATCGTCTTatgatttctctttttccttgttTCTCTGATACTGTTGCTACAGATTTCATATCCAACTTTCCATTTTGGTCTAATTATGAAGTTGCAGAGCTAACATGGGAAAATGGCCAGCTAGCCATGCATGGGCTTGGTGGGCTCCAACCCTCAGCCCAGACAAAGCCCACATGGGGCAGGGCCCATGATACACTAGAGTCCATTGTTCAACAAGCAACATGCCaaaatcaaaaatcaaatttcacCATGCCACAACAAGACCATACCACACCAACCAGTATAAGCTCCACCATTGCACCCTCCGGCCGGACGATCGAGAACTCCGGCCAAGCACAAACGGTGCCAATATTGACGAGGAAGCGAAGGCTGTCCGATTCCAGTTATTGTGGAGGCAGAAGCTTTTGCAGTAACAATAACATCTTAGAAGAGTGTGATCCTGGCAGTGGTGGTTGTGCTAGTGCTAGTGCCACATTTTGTAGGGACAAAGACAATGACACTACCATGATGACATGGGCTTCTCTAGAATCTGGTCGGAGCTTGAAGAGTAGTAAAACTCTAGAAGAGGATTCACCTTCTCACTGTGGCTCGGAAAACCCAGACCAAGAAGAAGACAGAGACACCAAGGTAGAAACAGGCCGTTCCACTTCAACAAGACGTAATCGAGCTGCTGCTATTCATAACCAGAGTGAGAGGAGACGAAGGGACAGAATTAATCAGAGAATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCTAGTAAGACAGATAAAGCTTCAATGTTGGACGAAGTGATTGAGTACTTAAAGCAACTCCAAGCACAGATACAAATGATGAGTATGAGAAACATGCCTCATCagcagatgatgatgatgcccTTAGCTATGCAACAACAACAGCTCCAAATGTCTATGCTGGCCCGAATGGGCCTTGGGCTGGGCTTGGGCATGGGCATGCTTAACATGAACACCATGGCTGCTGCTCCCAcggctcctcctccttctcttccACAACTCACTGTTGGAGCTCCTGCCATTGCTCCTTCATTTATGATGCCTTCCTTGCTTCAAGCCCATGCTCCTATAAAGCCTGAGCCTGCTTCTGCAGCCACAACCAGTGCTTCAGTTTCTTTGCCTGATCCATACAGCACTATTCTCTCACAATCAGTTAATATGGATATTTTCAACAGCATGGCTGCACTTTACCAGCAACAGATGAGACAGAAGAATCAGGCCATGAGCAGCAAGTCCCAACAACATCATGGGAAAGGGGACTGA 1968 0.4111 MENKLKQRRVSFSDHPAEEEEGFLRQKIEDDGIIRDNEHGTAIAAAVFAIHSQEQRKLLKMMREGSVSSRTPTMRRQEESISRRPSFGRSSKKKSFGQDQEGSFPVRLSSAVQSPRHISPLAGFQKQKESHIPIPIQCNNTNYSRAESWKKAKIEKIQKRYEKIKFKILFWESEKKMKAKLHMDRKKKMKAPNLTANLSKLEDFDDTKAVNQGIRTELPIHFISSLMILSCHRLMISLFPCFSDTVATDFISNFPFWSNYEVAELTWENGQLAMHGLGGLQPSAQTKPTWGRAHDTLESIVQQATCQNQKSNFTMPQQDHTTPTSISSTIAPSGRTIENSGQAQTVPILTRKRRLSDSSYCGGRSFCSNNNILEECDPGSGGCASASATFCRDKDNDTTMMTWASLESGRSLKSSKTLEEDSPSHCGSENPDQEEDRDTKVETGRSTSTRRNRAAAIHNQSERRRRDRINQRMKALQRLVPNASKTDKASMLDEVIEYLKQLQAQIQMMSMRNMPHQQMMMMPLAMQQQQLQMSMLARMGLGLGLGMGMLNMNTMAAAPTAPPPSLPQLTVGAPAIAPSFMMPSLLQAHAPIKPEPASAATTSASVSLPDPYSTILSQSVNMDIFNSMAALYQQQMRQKNQAMSSKSQQHHGKGD 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0937 655 Coils Coil 459 479 - -
Sto12g0937 655 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 451 523 IPR036638 GO:0046983
Sto12g0937 655 MobiDBLite consensus disorder prediction 61 112 - -
Sto12g0937 655 MobiDBLite consensus disorder prediction 636 655 - -
Sto12g0937 655 MobiDBLite consensus disorder prediction 313 343 - -
Sto12g0937 655 PANTHER TRANSCRIPTION FACTOR PIF7 253 650 - -
Sto12g0937 655 MobiDBLite consensus disorder prediction 1 24 - -
Sto12g0937 655 MobiDBLite consensus disorder prediction 413 447 - -
Sto12g0937 655 MobiDBLite consensus disorder prediction 407 469 - -
Sto12g0937 655 Gene3D - 448 514 IPR036638 GO:0046983
Sto12g0937 655 Pfam Remorin, C-terminal region 144 188 IPR005516 -
Sto12g0937 655 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 453 502 IPR011598 GO:0046983
Sto12g0937 655 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 253 650 IPR031066 -
Sto12g0937 655 Pfam Helix-loop-helix DNA-binding domain 458 503 IPR011598 GO:0046983
Sto12g0937 655 SMART finulus 459 508 IPR011598 GO:0046983
Sto12g0937 655 CDD bHLH_AtPIF_like 453 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0937 Sto-Chr12 5811792 5819697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0937 245 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 41.455 3.53e-44 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto12g0937 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0937 - - rcu:8284477 336.265