Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0929 ATGGGTTGCGTCAATTCCAAGCAGAACGTGTCCGTCACGCCCGCCGTCGACCACTCCGGTGTGTTTCGGGCCAATGCGCCGGTGAGTGAGTCGGAGAGGGCGAGTTCGATTTGGGGTTGTGATGAGTCGTCTTTGAGCTTCAGATTGGGGAATCTGCACAAGTATGTGGAGGGAGAGCAAGTCGCCGCCGGTTGGCCCGCCTGGCTCACCGCCGTCGCCGGCGAAGCCATTCACGGTTGGATCCCCCTCCGCCCCGATGCTTTTGAGAAGCTCGAGAAGATTGGGCAGGGTACGTACAGCAGCGTATTTCGAGCGAAGGAACTTGAGACAGGGAGGATGGTAGCACTGAAGAAGGTGAGGTTTGACATTTTTGAGCCAGAAAGTGTGAGGTTTATGGCTCGAGAAATAATGATCTTGAGAAGGCTTGATCATCCAAACATCATGAAATTGGACGGCTTGATTACTTCCAAATTGTCATCTAGCATATACCTTGTGTTCGAGTACATGGAACATGACATTACAGGGCTCTTGTCTAGCCCTGATATCAGATTCAGTGAATCACAGATTAAATGCTACATGAAACAGTTATTGTCTGGACTTGAGCATTGTCATTCACGGGGTGTAATGCATAGAGATATCAAAGGATCAAATCTTCTGTTGAATAATGAAGGAATATTAAAGGTTGCTGATTTTGGGTTGGCAAAATTCTCTGTTTCAGGGCACAAGCAGCCCCTCACCAGTCGCGTTGTCACCTTATGGTATCGTCCTCCTGAACTTTTACTGGGCTCAACAGATTATGGTCCATCTGTGGATCTATGGAGTGTTGGCTGTGTATTTGCAGAACTGCTTGTTAGGAGGCCTATCCTTCAGGGGAGAACAGAGGTGGAACAATTGCACAAAATTTTCAAACTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAAACTTCCTCATGCTACTCTATTTAAGCCACAGCATACATATAATAGTTGCCTCCAAGAGACCTTTAAAGATTTGCCTCTGACCAGTGTGAATCTTCTACAGACTCTTCTTTCCATTGAATCATACAAGCGCGGGACTGCCTCATCTGCTCTTTCATCAGAGTATTTCAAAACAAAGCCTTATGCGTGTGACCCATCAAGCTTGCCAATTTACCCACCTAGCAAGGAGATTGATGCAAAACATCGGGAGGAGTCAAGAAGGAACAAGATTGGTGGAAGAGTCCGTGGATctgaaacaagaaaatcatcaaAAAAGCCAGTAGGACTCAGGAAATTAGCCCCAGCAGAGGATTTGGCTAATCAAACTCGAATATCCCAAACGGTTAATAGTAAAACTGCCTGCAACATCCTTAAAGACGAGAGCACCGACGTAGGTGACGAGGGGCCAAAGTCATCTACATCTACTGATAAAGCAGAAGATGCTTCCCATGTAAAGAATGCATCTCATGGAGATATTCCCATGCTTCAAGTTTCAACATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAAAGATGATGGTTTAATGAGATCCCATTGTCGGTCTATATCAAGAGGGCATATTTTCAATCCAGTAGAACTTTCTACACTAAATCCAAGGAATAATTTGGAGTATAGAAACCTGGACAATAAGGAGCTTTGTGGTGGAGGACGCACCAACTCAAGGGGGGGCCATGAGACACGTGAAATCTCTAAGCTCGCAGTGCTGAACCAATGGAGCAAATTTGATCGTCCGGACTCATTTGATGCTTCTGATGAATACCACTCACAAGAACTATCTATGGCCCTTTATCAGAGAGAATATTCAGCATCCAAGAGAAGTAATCTGAGTTATCAGGATTCAGGAGAGAAGGTAGAATTTTCAGGACCCCTGCTATCTCAAATGCATACAGTAGATGAGCTCTTAGAAAGACATGAGCGTCACATACGGCGTACAGTGCGAAGATCTTGGTTTCAGACAGGTAAGAAGCATGGCAAGAAACTGGAAGGCTAA 1998 0.452 MGCVNSKQNVSVTPAVDHSGVFRANAPVSESERASSIWGCDESSLSFRLGNLHKYVEGEQVAAGWPAWLTAVAGEAIHGWIPLRPDAFEKLEKIGQGTYSSVFRAKELETGRMVALKKVRFDIFEPESVRFMAREIMILRRLDHPNIMKLDGLITSKLSSSIYLVFEYMEHDITGLLSSPDIRFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLLNNEGILKVADFGLAKFSVSGHKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVRRPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQHTYNSCLQETFKDLPLTSVNLLQTLLSIESYKRGTASSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRRNKIGGRVRGSETRKSSKKPVGLRKLAPAEDLANQTRISQTVNSKTACNILKDESTDVGDEGPKSSTSTDKAEDASHVKNASHGDIPMLQVSTSSGFAWAKRRKDDGLMRSHCRSISRGHIFNPVELSTLNPRNNLEYRNLDNKELCGGGRTNSRGGHETREISKLAVLNQWSKFDRPDSFDASDEYHSQELSMALYQREYSASKRSNLSYQDSGEKVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQTGKKHGKKLEG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0929 665 CDD STKc_CDK9_like 88 372 - -
Sto12g0929 665 SMART serkin_6 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0929 665 MobiDBLite consensus disorder prediction 455 481 - -
Sto12g0929 665 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 43 654 - -
Sto12g0929 665 MobiDBLite consensus disorder prediction 388 440 - -
Sto12g0929 665 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Sto12g0929 665 Pfam Protein kinase domain 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0929 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Sto12g0929 665 Gene3D Phosphorylase Kinase; domain 1 76 170 - -
Sto12g0929 665 MobiDBLite consensus disorder prediction 391 421 - -
Sto12g0929 665 Gene3D Transferase(Phosphotransferase) domain 1 171 411 - -
Sto12g0929 665 MobiDBLite consensus disorder prediction 456 481 - -
Sto12g0929 665 SUPERFAMILY Protein kinase-like (PK-like) 82 379 IPR011009 -
Sto12g0929 665 PANTHER CELL DIVISION PROTEIN KINASE 43 654 - -
Sto12g0929 665 ProSiteProfiles Protein kinase domain profile. 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0929 Sto-Chr12 5752298 5756382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0929 86 405 Core Cell Cycle Gene Families AT5G10270 50.742 8.05e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto12g0929 Pkinase 4.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0929 - - gmx:100803328 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1587 3 11815092 11820099 Sto12g0929 12 5752298 5756382 ECH
Sto12g0929 12 5752298 5756382 Sto12g0929 12 5752298 5756382 ECH