Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0926 TTGCAGGCAAATGAACAAGAAGGTTTGGCATGGGACACATACCATCATGTTTTTGAACTTGTGCATAATGGCAACATGTCATTTCGGGAGAACCGGATGGAAGAGGCTATCAACTTTTACTCAAGAGCAAATAGCATCAAATCTGGTGATCCTGTTATCCTCAGCAACCGGTGTGCTGCATATCTTAGgattagtttatttttaaaacacaGATCCCCATCAGCTTCAGAATATAAACCATTGAGTGGGCTTGATCCTACAATACATGCTGAACTTGGTTTGAAGGATGCTGAGAAGGTTGTTGACCTCCGAAGTAATTCAGTAAAATCATACCTTTTGAAGGCTAATGCACTTTTCCTGTTAGAGAAATATGAAAAGGTTCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCATTTAGTGATTCTCTGCAGGCTTCactaaaaaaattggaaaaaacaTTAGCTAGTTTGATGGGGATGAGTACACATGGACAACCAGAGCGAACTGATGACTTCGATTGCACCGTTTGCTTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGCGGACATTCTTTTTGTCGTTCATGTCTATTTCAGTCAATGGATCGTGGTAATAGATGCCCATTGTGCAGGACGGTTCTTTTTATCAGTCCTAGAACGTGTTCTATCAGTGTGACATTAAAGAACATCATACAAAAGAACTTTCCAGAGGAATATGCTGAAAGGAAGCAAGAGCATGACAGTATGAGCAACTATGGCGTAGATTTGATTCCTCTTTTTGTCATGGATGTTGTCATGCCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGATATAGACTTATGGTTAGAAGAATAATGGAAGGGAATCATCGGATGGGAATGGCAATAATAGATTCTACAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATAACTGAGTAG 960 0.3896 LQANEQEGLAWDTYHHVFELVHNGNMSFRENRMEEAINFYSRANSIKSGDPVILSNRCAAYLRISLFLKHRSPSASEYKPLSGLDPTIHAELGLKDAEKVVDLRSNSVKSYLLKANALFLLEKYEKVRDVILSGLQVDPFSDSLQASLKKLEKTLASLMGMSTHGQPERTDDFDCTVCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDSMSNYGVDLIPLFVMDVVMPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMAIIDSTTGSLAEFACEVEITE 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0926 319 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 3 319 - -
Sto12g0926 319 Pfam Zinc finger, C3HC4 type (RING finger) 175 212 - -
Sto12g0926 319 SUPERFAMILY TPR-like 22 152 IPR011990 GO:0005515
Sto12g0926 319 Gene3D - 257 319 IPR046336 -
Sto12g0926 319 Gene3D Tetratricopeptide repeat domain 15 154 IPR011990 GO:0005515
Sto12g0926 319 ProSiteProfiles Zinc finger RING-type profile. 175 213 IPR001841 -
Sto12g0926 319 SUPERFAMILY RING/U-box 169 238 - -
Sto12g0926 319 SMART ring_2 175 212 IPR001841 -
Sto12g0926 319 PANTHER RING FINGER PROTEIN 127 3 319 - -
Sto12g0926 319 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Sto12g0926 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 256 IPR013083 -
Sto12g0926 319 SUPERFAMILY PUA domain-like 259 318 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0926 Sto-Chr12 5729468 5733675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0926 163 216 C3H Transcription Factor Family AT1G74990 35.088 5.98e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0926 - - pvy:116113888 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0926 12 5729468 5733675 Sto12g0926 12 5729468 5733675 ECH