Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0915 ATGGAAAACGTCTTCGTGCTGTGTAAGGAGGAGGATAAGATGAATTTGCCTCCTGGGTTTCGCTTTCACCCAACGGATGAGGAGCTTATAAGTCACTACCTCTACAAGAAGGTCACCGATACCAACTTCTCTGCTAGAGCCATTGGAGAGGTGGATTTGAACAGGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAGAAAGAGTGGTACTTCTTCTGCGTGAGAGACAGAAAATACCCAACTGGTTTGAGAACCAACAGAGCCACTGAAACAGGATACTGGAAGGCCACAGGGAAAGACAAGGAGATTCTCAGAGGAAAATCACTGGTTGGAATGAAGAAAACTCTGGTTTTCTACAAGGGAAGAGCACCCAAAGGAGAGAAAACCAACTGGGTCATGCACGAATACAGATTGGAGGGTAAATTCTCTAATGAGTGGGTGATTTGCAGGATTTTTCAAAAGGGTTCAAGTGGTAAGAAAACCCATATTTCCGGGATGATGAGGTTGGATTCTTTAGGAAATGATATGGGATCTTCTGGTTTACCACCATTGACAGATTCTTCACCTTACACTGGAAACAAGACCAAACCCCTCACAGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATCGATGCTCAAAGAAACCAAGGAGGGATCTTTGATTCTTCCACCAATTCCTTCTTTGGGGTTTCTTCAAATCCCACCAGAATCCCACTTTCTGGTTCCTTATATTCCACACAACCCCCCCTTCAACCTCCTCCAAATTTAGCTTTCCCCACTTCTGTTTATAGCCTGCAAGACCAGACCCTCCTCAGAGCCTTGATTGAAAACCATGGGTCAAACAGGAACAGTTTCAAAACAGAAGGGGAAATGGTCAGCGTCTCTCAAGAAACAGGTCTCACTACTACTGACATGAACCCTGAAATCTCTTCCGTCGTGTCCAGCTTTGATATGGGTCGAAGGCCCTTTGAGAATCACCACCTTCCTGCTTCAGCTGCATCAGTGGAGTTTGAAAGCCTGTGGAATTACTAG 1044 0.4569 MENVFVLCKEEDKMNLPPGFRFHPTDEELISHYLYKKVTDTNFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATETGYWKATGKDKEILRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSNEWVICRIFQKGSSGKKTHISGMMRLDSLGNDMGSSGLPPLTDSSPYTGNKTKPLTESAYVPCFSNPIDAQRNQGGIFDSSTNSFFGVSSNPTRIPLSGSLYSTQPPLQPPPNLAFPTSVYSLQDQTLLRALIENHGSNRNSFKTEGEMVSVSQETGLTTTDMNPEISSVVSSFDMGRRPFENHHLPASAASVEFESLWNY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0915 347 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Sto12g0915 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 336 - -
Sto12g0915 347 SUPERFAMILY NAC domain 13 157 IPR036093 GO:0003677|GO:0006355
Sto12g0915 347 Gene3D NAC domain 25 161 IPR036093 GO:0003677|GO:0006355
Sto12g0915 347 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 8 336 - -
Sto12g0915 347 ProSiteProfiles NAC domain profile. 16 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0915 Sto-Chr12 5679982 5681260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0915 14 347 NAC Transcription Factor Family AT5G07680 56.522 7.46e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto12g0915 NAM 9.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0915 - - gmx:100170719 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1569 3 11638219 11639384 Sto12g0915 12 5679982 5681260 ECH
Sto12g0915 12 5679982 5681260 Sto12g0915 12 5679982 5681260 ECH