Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0911 ATGTTGCCAAGGGCGTCCCTGCGCCAACGATCGGGGTCTCGTCCTTTGATCTTCTCGGCCTTCTCCCAGCATTGCTGTTTGACAGTGTGGGGGAAGCTGCGAGGGATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCATTAGCAACCGTCATGTGACTTATTCGAAGCGGAGAAGTGGAATAATGAAGAAAGCCAAGGAATTATCAATATTATGTGATATAGATATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGCAATATCGAGGAAGTCATTGAAAAATTTGCTCAACTAAGCCCTCAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCTCTGAAGAAAACTTTCAAAAAGTTGGATCATGATGTTAAAATACAAGATTTCTTGGGTTCAAGCAGTCAGCAAGTGGAGGAATTAACTCATCACTTAAGGATGCTACAAGCTCAACTTACAGAAGTGCATCAGAGACTGAGcTATTGGAGTAATCTAGAGAAGATCAATAATGTAGAACATCTTAGGCAAATGGAAGACTCGCTAAGGGAGTCAATCAATCGAATACGTCTACATAAGGAAAATTTTGGTAAAAACCAACTAGTATCACTTGAATGCGCTAACCAGTTACAGGAAGGGATCACTTTACCCCTGATGATGGCTGGTCTGCAAGAAACCCAACCCCTGTCTTGGCTTTTGCATAATGATAACAATCAATTGATTTTACCCAGTGAACCAAAATTTCTACCATTTAGTGATAATTCCAATAGAGATGCTGAGTGCTCCAATAATGTTTCACTGCCAGGCTATTCTGGTTATATTAGCAGTAGCAAACTTGAGGTTGGAAACTCACCCCAAGTTGCTACTATGGGTCAGGGCAGTGGTACCGTGAATGATTTCAATGAAAATGCTTGCTTAAGTGCTCAACGTTGTGAGCAGTTTTCATTCCCTCCTCCACCGGATAGTGAGGAAGCGACGCATCATCAAGCTATGAACAGTAAATCAAACCCTGTGGATTATCAAGTTAATAGCAGCTTTGATCTGCCTAGATCACTCTTTGAAAATGGACATCAGTTCTGGAACCCTTCTCCTGGACCTTGTGGCATTGCCATGTATAATGAGAACGGCTACCATCAGGCCTGTGAAGGTTTGGCCAAAGGACCAGCCAGCAGGCACAGCATTGTAAGACACCAAGGAGCGCCCATCGCTTGTGGTAACCTTAAAGGACAGGCTTTGTCCATTGAGGTAGGCGTTGCTTTGCCAGTTCTGACCCCAATTCCTTGA 1314 0.43 MLPRASLRQRSGSRPLIFSAFSQHCCLTVWGKLRGMGRVKLKIKKLESISNRHVTYSKRRSGIMKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNIEEVIEKFAQLSPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQQVEELTHHLRMLQAQLTEVHQRLSYWSNLEKINNVEHLRQMEDSLRESINRIRLHKENFGKNQLVSLECANQLQEGITLPLMMAGLQETQPLSWLLHNDNNQLILPSEPKFLPFSDNSNRDAECSNNVSLPGYSGYISSSKLEVGNSPQVATMGQGSGTVNDFNENACLSAQRCEQFSFPPPPDSEEATHHQAMNSKSNPVDYQVNSSFDLPRSLFENGHQFWNPSPGPCGIAMYNENGYHQACEGLAKGPASRHSIVRHQGAPIACGNLKGQALSIEVGVALPVLTPIP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0911 437 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 36 391 - -
Sto12g0911 437 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Sto12g0911 437 Gene3D - 49 132 IPR036879 GO:0003677|GO:0046983
Sto12g0911 437 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Sto12g0911 437 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677|GO:0046983
Sto12g0911 437 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677|GO:0046983
Sto12g0911 437 MobiDBLite consensus disorder prediction 327 349 - -
Sto12g0911 437 ProSiteProfiles MADS-box domain profile. 36 88 IPR002100 GO:0003677|GO:0046983
Sto12g0911 437 CDD MADS_SRF_like 37 117 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sto12g0911 437 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 391 - -
Sto12g0911 437 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 90 IPR002100 GO:0003677|GO:0046983
Sto12g0911 437 Coils Coil 112 132 - -
Sto12g0911 437 Coils Coil 149 169 - -
Sto12g0911 437 Coils Coil 185 205 - -
Sto12g0911 437 SUPERFAMILY SRF-like 37 130 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0911 Sto-Chr12 5650833 5659292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0911 36 311 Type I MADS-box Gene Family AT2G03060 50.175 9.11e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto12g0911 SRF-TF 8.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0911 - - pvu:PHAVU_003G189100g 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0911 12 5650833 5659292 Sto12g0911 12 5650833 5659292 ECH