Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0902 ATGGAGGACATGAAACCTGCAAATTTGCTATCACTTGGTGAGGGTTCCAGCTCTCAAGTTGCAGATAGGCATACGGGTGCTTTTCATGTCCTTGAAGTTGGGGATTGTGATGCATCAGACGAAGAACACCTTAGTCAAACAGTAGAATGTCGAATTTGCCAGGAGGAGGATAACCTTAATAATTTGGACATTCCCTGTGCTTGCAGTGGCACCTTGAAGTATGCTCACAGGAGATGTATTCAACTATGGTGCAATGAAAAGGGAGATACAATTTGTGAGATCTGCCATCAGGTAACTTCAAATGCTCATATGGAGGGTTGGACAATCTCTGGTACCCCTTTAGATTTACATGATCCTCAAATTTTGGCAATTGCAGCTGTGGAGCGCGATGTTCTGGAACCTCAGCATGATGACTCTGCTCATACTGGAGGCAGTGGAATTGCGTTTTACCGCTCTATTACTTTACTTATAATAACTCTTTTACTTCTGAGGCATGCTGCTTCCTTCGTCAATACTGATTTGGAGAAAGCTGTAACCTATATTTCTTTCTTGTTGTTTCGTGCTGCTGCTTTTATTCTTTCATGCTATCTTATTGCTAGAACCATTCATATATTACAGAATGGACGTCCAAGACAACGAGCAGCTGGAGGACTTGCATATATGTTACAGAGAGAGCAACCCCAAGGCTTACAGTTTACTACATCACCAGTGCCTGCTTTTCACTGA 726 0.4256 MEDMKPANLLSLGEGSSSQVADRHTGAFHVLEVGDCDASDEEHLSQTVECRICQEEDNLNNLDIPCACSGTLKYAHRRCIQLWCNEKGDTICEICHQVTSNAHMEGWTISGTPLDLHDPQILAIAAVERDVLEPQHDDSAHTGGSGIAFYRSITLLIITLLLLRHAASFVNTDLEKAVTYISFLLFRAAAFILSCYLIARTIHILQNGRPRQRAAGGLAYMLQREQPQGLQFTTSPVPAFH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0902 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 106 IPR013083 -
Sto12g0902 241 CDD RING_CH-C4HC3_MARCH 50 96 - -
Sto12g0902 241 SUPERFAMILY RING/U-box 47 98 - -
Sto12g0902 241 ProSiteProfiles Zinc finger RING-CH-type profile. 42 102 IPR011016 GO:0008270
Sto12g0902 241 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 37 220 IPR033275 -
Sto12g0902 241 Pfam Protein of unknown function (DUF3675) 102 202 IPR022143 -
Sto12g0902 241 PANTHER OS11G0600700 PROTEIN 37 220 - -
Sto12g0902 241 SMART ringv_2 49 96 IPR011016 GO:0008270
Sto12g0902 241 Pfam RING-variant domain 50 95 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0902 Sto-Chr12 5614539 5616924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0902 49 162 C3H Transcription Factor Family AT2G37950 25.641 8.14e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0902 - - jre:109003983 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0902 12 5614539 5616924 Sto12g0902 12 5614539 5616924 ECH