Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0897 ATGGGGAGGGCACCGTGCTGTGAGAAGGTTGGGGTTAAGAAAGGGCCTTGGACTCCTGAAGAGGACATTGTGTTAGTGTCTTACATTCAACAACACGGTCCTGGCAATTGGAGATCCGTTCCCACCAATACTGGTTTGATGAGATGCAGTAAAAGCTGCAGGCTTCGATGGACCAACTATCTTCGCCCCGGAATAAAGCGAGGCAACTTCAGCGAGCATGAGGAGAAGATGATCATCCACCTTCAAGCTCTTCTGGGCAACAGATGGGCCGCCATAGCTTCCTATCTCCCTGAGAGGACCGATAATGACATCAAGAACTATTGGAACACCCATTTGAAGAAGAAGCTCCTCATCACCAACCATCGTCATCATTCCCACCCTAATGGTAAGGGTCAGTGGGAGAGAACCCTTCAAACCGACATCCACACAGCCAAGCAAGCCCTCTGCCACGCCCTCTCCCTTCACTCTTCACCCTCCCCTTACGCCTCCAGCACCCAAAACATAGCCCGATTGCTCCAAAACtggaccaccaccaccaccaccaccaccaccactactactactactaaatCCCCTgtttctaattctaattctaattctaattcctcttcttcctccttcgcCAATCTTTGTATTCCCCCGACCTCCAATAACTCCTCCTCCGATGCCGACACCAGTAGCTACACCTTCTTCCACCAAGATGACGAAACCAAACCAAATTTGCACGACTCATTACTCGACAAGTGGCTTTTCGACGACGATCCCCTCCTTAATCCTACTCAAGACCTATTCATCCCCATTTCACCATTCCACCAAACTCCTCCACACTTGTTCTGA 837 0.448 MGRAPCCEKVGVKKGPWTPEEDIVLVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFSEHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLLITNHRHHSHPNGKGQWERTLQTDIHTAKQALCHALSLHSSPSPYASSTQNIARLLQNWTTTTTTTTTTTTTTKSPVSNSNSNSNSSSSSFANLCIPPTSNNSSSDADTSSYTFFHQDDETKPNLHDSLLDKWLFDDDPLLNPTQDLFIPISPFHQTPPHLF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0897 278 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 254 - -
Sto12g0897 278 MobiDBLite consensus disorder prediction 181 207 - -
Sto12g0897 278 CDD SANT 69 112 IPR001005 -
Sto12g0897 278 PANTHER OS07G0484700 PROTEIN 1 254 - -
Sto12g0897 278 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto12g0897 278 CDD SANT 16 61 IPR001005 -
Sto12g0897 278 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto12g0897 278 SMART sant 13 63 IPR001005 -
Sto12g0897 278 SMART sant 66 114 IPR001005 -
Sto12g0897 278 Gene3D - 13 66 - -
Sto12g0897 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto12g0897 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sto12g0897 278 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto12g0897 278 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto12g0897 278 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto12g0897 278 Gene3D - 69 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0897 Sto-Chr12 5588970 5589892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0897 1 253 MYB Transcription Factor Family AT5G62470 48.673 2.38e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0897 Myb_DNA-binding 5.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0897 K09422 - sspl:121750169 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0897 12 5588970 5589892 Sto12g0897 12 5588970 5589892 ECH