Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0892 atgaagaaattagagaaactaAGTGATGATATAAAGATAGAATGGAGGATCATGGAGGGAGGAGATGATCTgcatcaccaccaccaacatCATCACCACCGTCCAAACTTCCCATTCCAGCTGCtcgagaagaaggaagatcatCATCAAGAACCACCTTCCTGCTCCACCAGCACCTCTTCCCCATACCCATCCCTAGCCATCTCCGCCCAACCAACCACCACAAATTCCAACCGATCCATCCAGGTTCTTAACGttccacccaccaccaccaccaccactacctCCTCCTCCGAACCTTCCAATAAAAAGCCCCCTCCCAAACGAACCTCCACCAAGGACCGCCACACCAAAGTCGACGGCCGAGGTCGCCGAATCCGCATGCCCGCACTCTGCGCCGCCCGCGTCTTCCAGCTCACTCGCGAGCTCGGCCACAAGTCCGACGGCGAAACCATCGAGTGGTTGCTCCAACAGGCTGAGCCCGCCGTCATCGCCGCCACAGGCACCGGCACAATCCCCGCTAACTTCACCTCCCTTAATATTTCCCTCCGAAGCTCCGGCTCCACCATGTCCGTCCCCTCCCAGCTAAGATCCTCCTACTTCAATCCCAACTTCTCCGTTCAGCCCCGCCGGAGCCTGTTTCCCGGGATCGGCTTGTCCTCCGATGCGAACAACACTTCCACGCTCCTCAATTTCCAGTCCAATAATAACTTCGGCGGCGGCGTGTTGCAAACGAAGCAGGAGTTGCGCGGCGGAGAAGGCGGCGGTGCTCCGTCGTCTTCGACGACGACGGTGGATTTGTCGGAGGCGGAAGAAGGTATGGGAAGGAAAAGGCGGGCGTCGAGTGAGCAGGAGTTGTCAACGACGCAGCAATACCAAATGGGAAGTTACTTGTTGCAGTCAAGCGCGGGGGCGATGGCGTCGAGCCACGCGCAGATTCCCGCAAATATTTGGATGCTAACCAATTCCAACAACCAAGTCATGAGCGGGGATCCCATATGGACGTTCCCACCCGTCAACAATAGTGCTTTGTATAGAGGCGCCTCTATGTCCAGTGGCTTGCATTTCATGAACTTCCCTACCCCTATGGCCTTGTTGCCTAGTCAGCAATTACCCTCATCCGCTGCCATTTCTGGCGGAGGCCCAAATAATATGAGTGAAGGCCATTTGAGTATGCTTGCTGGGCTAAGCCCATACCGACCGCTCATTGGCGTTTCAGAGTCTCAGCCCACTGCCTCCTCCCATCAGGGTGGCGCCGCCGGCGACGATCGACATGATACTACCACTCACCGCTCCTAG 1299 0.5296 MKKLEKLSDDIKIEWRIMEGGDDLHHHHQHHHHRPNFPFQLLEKKEDHHQEPPSCSTSTSSPYPSLAISAQPTTTNSNRSIQVLNVPPTTTTTTTSSSEPSNKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSVQPRRSLFPGIGLSSDANNTSTLLNFQSNNNFGGGVLQTKQELRGGEGGGAPSSSTTTVDLSEAEEGMGRKRRASSEQELSTTQQYQMGSYLLQSSAGAMASSHAQIPANIWMLTNSNNQVMSGDPIWTFPPVNNSALYRGASMSSGLHFMNFPTPMALLPSQQLPSSAAISGGGPNNMSEGHLSMLAGLSPYRPLIGVSESQPTASSHQGGAAGDDRHDTTTHRS 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0892 432 MobiDBLite consensus disorder prediction 403 432 - -
Sto12g0892 432 MobiDBLite consensus disorder prediction 106 121 - -
Sto12g0892 432 MobiDBLite consensus disorder prediction 53 105 - -
Sto12g0892 432 MobiDBLite consensus disorder prediction 46 121 - -
Sto12g0892 432 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 431 IPR005333 GO:0003700
Sto12g0892 432 MobiDBLite consensus disorder prediction 247 288 - -
Sto12g0892 432 Pfam TCP family transcription factor 110 287 IPR017887 -
Sto12g0892 432 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 27 431 - -
Sto12g0892 432 ProSiteProfiles TCP domain profile. 112 166 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0892 Sto-Chr12 5559428 5562727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0892 93 370 TCP Transcription Factor Family AT3G47620 46.512 1.76e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Sto12g0892 TCP 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0892 - - pvu:PHAVU_003G190900g 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0892 12 5559428 5562727 Sto12g0892 12 5559428 5562727 ECH