Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0880 ATGTTGCTTCAGAGAGTGACATTCATTCATCCTGTTATTAGAATAGGCTTCTGCATTTCATTTTCTTGGAGGGCTGTGGTTGATAGATTATTGACAAAATATGGTGTAATAGTTGGTGGCAGAAGCAGCACCCATTCCTATACAAGCCAATTGATAATTGGAATCAACAACAAATTAGGGAAATCTGAGACTCTTCCTTCTCCAAGATCTGAAGGTGACATACTGTCCTCACTAAATTTGAAGGCCTTCACATACAATGAGCTTAAGAATGCCACTAGAAACTTCCGTTCTGATGGTCTAATTGGAGAAGGAGGCTTTGGTTACGTCCACAAGGGCTGGATCAATGACCATTCCCTCGCTCCTACAAACCCTGCCTCTGGAATGGTTGTAGCTGTCAAGAAGCTCAAACCTGAAGGTTTTCAAGGCCATAAGGAGTGGTTGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTGGTGAAACTTTTTGGATACTGCCTGGATGGGGATAATCGGCTTCTAGTGTACGAGTACATGCCCAAAGGAAGCTTGGAGAATCATCTATTTCGCAGGGGCACACAGCCACTTCCATGGTCAACAAGGATCAAAGTTGCCATTGGTGCTGCTCGAGGCCTTACCTTTTTACATGACTCTAAACCACAAGTTATCTACCGTGATTTCAAGGCTTCCAATATATTATTAGATTCGGATTTCAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACCGGTGATCGTTCTCATGTTTCAACTCAAGTATTGGGCACTCAAGGCTATGCTGCTCCTGAATATATTGCTACAGGATGGTTGACTGCAAGGTGTGATGTGTATAGCTTTGGGGTAGTGCTATTGGAACTACTATCAGGGCGCCGAGTGGTGGATAAGACAAAATCAGGAGTGGAACAGAATCTGGTGGAATGGGCAAAACCATATTTAGGTGACAGGAGGAAGCTGTTCAGGATAATGGACACCAAGTTAGAAGGACAGTACCCTCAAAGGGCAGCTTACACAGCAGCAATCCTTGCATTACAGTGCATTAGTGAGGCCAAATTCAGACCACACATGTCTGAGGTTTTGACTACTTTGGAGCAGCTTCTTGTTCCTAGATCCTCTAGACCTACTACCCCTTCTCCTTCTGCATCCCCATCTGACACCACTTTCAGGCCATCCAAGAAATCCCAAAAGGGACAAGATCATCAGTGA 1239 0.4439 MLLQRVTFIHPVIRIGFCISFSWRAVVDRLLTKYGVIVGGRSSTHSYTSQLIIGINNKLGKSETLPSPRSEGDILSSLNLKAFTYNELKNATRNFRSDGLIGEGGFGYVHKGWINDHSLAPTNPASGMVVAVKKLKPEGFQGHKEWLSEVNYLGQLHHPNLVKLFGYCLDGDNRLLVYEYMPKGSLENHLFRRGTQPLPWSTRIKVAIGAARGLTFLHDSKPQVIYRDFKASNILLDSDFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGWLTARCDVYSFGVVLLELLSGRRVVDKTKSGVEQNLVEWAKPYLGDRRKLFRIMDTKLEGQYPQRAAYTAAILALQCISEAKFRPHMSEVLTTLEQLLVPRSSRPTTPSPSASPSDTTFRPSKKSQKGQDHQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0880 412 Gene3D Transferase(Phosphotransferase) domain 1 181 386 - -
Sto12g0880 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Sto12g0880 412 MobiDBLite consensus disorder prediction 379 402 - -
Sto12g0880 412 MobiDBLite consensus disorder prediction 379 412 - -
Sto12g0880 412 ProSitePatterns Protein kinases ATP-binding region signature. 101 134 IPR017441 GO:0005524
Sto12g0880 412 PANTHER OS01G0588500 PROTEIN-RELATED 38 387 - -
Sto12g0880 412 ProSiteProfiles Protein kinase domain profile. 95 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0880 412 CDD STKc_IRAK 101 377 - -
Sto12g0880 412 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 38 387 - -
Sto12g0880 412 Pfam Protein tyrosine and serine/threonine kinase 100 313 IPR001245 GO:0004672|GO:0006468
Sto12g0880 412 Gene3D Phosphorylase Kinase; domain 1 67 180 - -
Sto12g0880 412 SUPERFAMILY Protein kinase-like (PK-like) 79 397 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0880 Sto-Chr12 5510661 5512827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0880 70 398 Glycoside Hydrolase AT3G07070 50.147 1.22e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sto12g0880 PK_Tyr_Ser-Thr 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0880 - - csin:114319029 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1523 3 11257400 11261629 Sto12g0880 12 5510661 5512827 ECH
Sto8g1974 8 12748464 12750879 Sto12g0880 12 5510661 5512827 ECH
Sto12g0880 12 5510661 5512827 Sto12g0880 12 5510661 5512827 ECH