Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0878 ATGGAGTTTGCTTTGAGGAGATCTGGCCAAGGAGGTGGCGTAGTCAAGGAAGAGATTTTGAGAACTGAATCTACTACTGCTGGAGATCATCATgaacctcctcctcctcatcatcatcaacaagACACTACTCTTATCAagGTGCAACCCAATATTAATAATAGTAGCGTAAGATCCATGGGGGAGACTGTACCAACCGCATCCTCAACCAAAAAGGAAGAGGTTGATGAGGTTGAATGTGCGAGAGCAGAAATGGGTGAGGTGAGAGAAGAAAATCAAAGGCTAAAGACGTTGTTGGATCGAATAATGAAGGAATACCAGGCCCTGCAAATGCAATTCCAGCTCATGGCTAATAATGCTAATCATAATGAAGCCCAAACTGAGGAATCGCACCTGGTTTCCCTCACCCTTGGAAGACTCCCCAGTACTATTCTTCCAAAATCTCAAGACAAAACAATTACCAATAAACTCACCTCTAAAGAAGAGGATGATGATGAGTTGGCTCTGGGACTGGACTGCAAATTTGAGACATCAAAGTCAGGAAGCTCCACTGAAGCTTTgcccaataataataatccaaGTCCCACTAATAGTTGTCATCAACTGCCCaaggaagaagaagcagcagAGAGTTGTAAAAAGGCACTCAACAACACTAATAATAATGCTGCCACCGACCAAGATGAAGTCTTGCAACAAAATCCTGCTAAGAAGGCCAGAGTTTGTGTTAGAGCAAGATGTGACACCCCCACTATGAATGATGGATGCCAATGGAGGAAATATGGACAGAAGATTTCAAAGGGTAATCCTTGTCCAAGAGCTTACTATCGTTGCACTGTGGCGCCTAATTGCCCTgtGCAAAGATGTGCAGATGACATGTCCATTCTAATCACCACGTATGAAGGGACCCACAGCCACCCTCTACCTCTCTCTGCTACTGCTATGGCTTCCACCACTTCCGCAGCTGCTTCCATGCTATTGTCTGGCTCATCTTCAACCTCTCATCACCCTCCACCCTCCTCACTAATACCTTCTTCATCAACATCCAGCACCACCACAGCCTCTGATCTCCACGGCCTCAACTTCTACCTCTCCGATGTCATTGGTTCAAAACCAAAGCAGTTCTACCTCTCCAACCCCGCACTTTCACCTTCCCCTTCACACCCAACAATCACCCTCGACCTCACTAcctccaataataataataatagattccCATTCCCCTCCTCGAACTACATCAATCTCCCTCCAAGATTCCCTACTTCCACCACCAGTCTCAGCTTCACTTCCTCCGAATCCAATAACGCCTTCAGTTGGCCCCACAACAACAATACCAATAATGCCTTCCTCACCTACAACACTCAACCGCCATATACTAATAGTAACAGAAGCACCAACATGAACATGAACCTCGGAAGACAATTACCAATGTCGTCAATCCCAACTCAGAATCCTTCAGTACTGCCGGATACTATAGCTGCAGCAACCAAAGTGATCACGGCTGACCCAAGTTTTCAGTCTGCTTTGGCTGCGGCACTTTCTTCCATTATAGGCACAGGAAGTAGTAGCACACAAGGTGTGGCACTGGGACTGGGAGAAACGTTGGGTCACatcaataagaataataataatattaccaAATTGGGGGACTTGTTTCCTGCTGCTGCGAATTCTTCCAAACTCACTAACGGATGTGCGGCCTCGAGCTTCTTGAACAGAACGACGTCGTCCGCCAGTACACAGACGGGAAGCAGTAGTTTGACGTTCTTACAGCCTTCTTCTTTGCCATTTTCTAGCTCCAACACCGCCTCTGCCTTGTCTCCTGCGGATCATAACAGAGACAACAACTCCAATTCCTGA 1860 0.4376 MEFALRRSGQGGGVVKEEILRTESTTAGDHHEPPPPHHHQQDTTLIKVQPNINNSSVRSMGETVPTASSTKKEEVDEVECARAEMGEVREENQRLKTLLDRIMKEYQALQMQFQLMANNANHNEAQTEESHLVSLTLGRLPSTILPKSQDKTITNKLTSKEEDDDELALGLDCKFETSKSGSSTEALPNNNNPSPTNSCHQLPKEEEAAESCKKALNNTNNNAATDQDEVLQQNPAKKARVCVRARCDTPTMNDGCQWRKYGQKISKGNPCPRAYYRCTVAPNCPVQRCADDMSILITTYEGTHSHPLPLSATAMASTTSAAASMLLSGSSSTSHHPPPSSLIPSSSTSSTTTASDLHGLNFYLSDVIGSKPKQFYLSNPALSPSPSHPTITLDLTTSNNNNNRFPFPSSNYINLPPRFPTSTTSLSFTSSESNNAFSWPHNNNTNNAFLTYNTQPPYTNSNRSTNMNMNLGRQLPMSSIPTQNPSVLPDTIAAATKVITADPSFQSALAAALSSIIGTGSSSTQGVALGLGETLGHINKNNNNITKLGDLFPAAANSSKLTNGCAASSFLNRTTSSASTQTGSSSLTFLQPSSLPFSSSNTASALSPADHNRDNNSNS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0878 619 Coils Coil 71 112 - -
Sto12g0878 619 MobiDBLite consensus disorder prediction 177 201 - -
Sto12g0878 619 MobiDBLite consensus disorder prediction 326 350 - -
Sto12g0878 619 Gene3D WRKY domain 237 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto12g0878 619 MobiDBLite consensus disorder prediction 1 42 - -
Sto12g0878 619 MobiDBLite consensus disorder prediction 55 76 - -
Sto12g0878 619 SMART WRKY_cls 252 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto12g0878 619 MobiDBLite consensus disorder prediction 22 38 - -
Sto12g0878 619 MobiDBLite consensus disorder prediction 596 619 - -
Sto12g0878 619 ProSiteProfiles WRKY domain profile. 247 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto12g0878 619 MobiDBLite consensus disorder prediction 177 205 - -
Sto12g0878 619 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 612 IPR044810 GO:0003700
Sto12g0878 619 SUPERFAMILY WRKY DNA-binding domain 245 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto12g0878 619 Pfam WRKY DNA -binding domain 253 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto12g0878 619 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 59 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0878 Sto-Chr12 5495888 5499460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0878 85 598 WRKY Transcription Factor Family AT5G15130 39.893 3.64e-75 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto12g0878 WRKY 7.9e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0878 - - gmx:100804403 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1517 3 11204648 11208858 Sto12g0878 12 5495888 5499460 ECH
Sto11g0989 11 10245642 10247095 Sto12g0878 12 5495888 5499460 ECH
Sto12g0878 12 5495888 5499460 Sto12g0878 12 5495888 5499460 ECH