Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0870 ATGGTGGGTGGCAGAGTCTTTAGCCATGCTTCCACTTTCAGTATTCTGCTTCCCAAACCAAACACTACTCTTGACCCTCTTTTCCTTCCtgcctcttcctcttctttcctAGGTCCAAGATCCATGGTGAGTTTCGCAGATGCGCGAGGAGAAAAGAGGGGTAGGTGGACGACGTCGTTTGACGGATTTGATGACGAGGATGAAATGGGAGAAGAggagtataataataataataataatatcgaACAACGAGAGAAGAAGAGGCGGCTCAGTGTGGAGCAGGTTGAGTTTCTGGAGAAAAGCTTCGAGGTAGAGAACAAGCTCGAGCCAGAGAGGAAAATCCAGCTAGCCAAGGAGCTTGGCTTGCAGCCTCGCCAAGTAGCCATATGGTTCCAGAACCGACGAGCTCGATGGAAGACCAAGCAGCTTGAGAAGGACTATGAGTCTCTCGAAGCTTCCTATTCCAATCTCAAAGCCAACTACGACAACCTCCTCAAGGAGAAAGACAAGTTAAAAGCAGAGGTTGCCAATCTCACGGAGAAATTGCAGGAACAACCGCCGCCGCACAAGTACATATTGGATTCAGAGAGCCCACATTATACAGATGGAGTTCAATCTTCATTACTACTGGAACACTGTGATTCCTCTTATGCCTTTGACCCTGATCACTCCGATGTGTCTCAGGATGAGGAAGATGACTTGATGCGCAAGACCCTAATATTGCCTTCAATCATCCTTCCCAAACTCGAAGATGTTGATTACTCCCACCCTCCTGAAAGTTCGTGTCATTTTGGATTTGCAGAGGAAGATGATGCCTTTTGGTCCACCTGGTCTTACTAA 840 0.4512 MVGGRVFSHASTFSILLPKPNTTLDPLFLPASSSSFLGPRSMVSFADARGEKRGRWTTSFDGFDDEDEMGEEEYNNNNNNIEQREKKRRLSVEQVEFLEKSFEVENKLEPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYESLEASYSNLKANYDNLLKEKDKLKAEVANLTEKLQEQPPPHKYILDSESPHYTDGVQSSLLLEHCDSSYAFDPDHSDVSQDEEDDLMRKTLILPSIILPKLEDVDYSHPPESSCHFGFAEEDDAFWSTWSY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0870 279 Gene3D - 136 184 - -
Sto12g0870 279 Gene3D - 89 135 - -
Sto12g0870 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 275 IPR045224 GO:0003700
Sto12g0870 279 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Sto12g0870 279 SMART HOX_1 84 145 IPR001356 GO:0003677
Sto12g0870 279 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Sto12g0870 279 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Sto12g0870 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 50 275 - -
Sto12g0870 279 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Sto12g0870 279 SUPERFAMILY Homeodomain-like 70 143 IPR009057 -
Sto12g0870 279 Coils Coil 133 181 - -
Sto12g0870 279 CDD homeodomain 86 142 IPR001356 GO:0003677
Sto12g0870 279 Pfam Homeobox associated leucine zipper 141 183 IPR003106 GO:0006355|GO:0043565
Sto12g0870 279 Pfam Homeodomain 84 139 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0870 Sto-Chr12 5458342 5459274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0870 85 183 Homeobox Transcription Factor Family AT3G01470 71.717 2.52e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto12g0870 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0870 - - tcc:18604593 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1506 3 11122580 11123541 Sto12g0870 12 5458342 5459274 ECH
Sto12g0870 12 5458342 5459274 Sto12g0870 12 5458342 5459274 ECH