Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0854 ATGGACGGTGGCGAAACTCACCTATGTGCGCCGGATAAGGAGGAGAATGATGAGGATGATGCGCCAGATTGTCTCTCCCGAGTTCGACTCGTAGATGCTCCCATACTCTTATTTGTTTGCTACCACAGGGCTCTCCGCGGGGAACTCAATGAGCTTCGGCGCTTGGCGGAAACGTCGTCGTTGCAGAATGTATCACACAGCCGAGAGCTTATTCTCAAGCTTCATCGAAGATTCGAATTTTTCAAACTTGCTCTCAAGTATCATTGCGTCGCGGAAGACGAGGTTATCTTTCCTGCATTGGATGTACATGTAAAAAATGTGGTATGTACATATTCCCTTGAACATAATTGCACCGAAGACCTTTTCACTTCTATCTTTCACTATTTGGATGAGTTGATGAATCCAAATGAGAATCTTTCCGAGATGTTTCAAGAACTTATATACTGCATGGGAATCTTGAAAACAACAATGTTCCAGCATATGCTAAAAGAAGAAGAGCAGGTTTTTCCCCTCTTGATGCAGAAATTTTCTACCAAGGAACAGGCTTTGCTTGTTTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGCAGCAGGTTTTGCCATGGATGGCATCTTTTCTTTCTGCAGACAAACAAGCAGAACTTAGGCAGTGCCTAAATGAAATTGCACCAATGGAGAAAGAACTGCAAGAGGTTTTGATTTCTTGGCTTGGTAGCAATGTCCAAACCTTCACTGAGGTTTGGTTTCTGAGTAAAGAAGTTCAATGTGCTGATCCCCTAAATATGGAAACATCACTTGGGATGAATTCTTCCAATCGGAATTTCAGAACAATTTCAAAtcagaagaaagaaaatttctTTGACGTAGAAGATAGATCCAACAAGGTTAATGTTCTTCATCTTTGGCATGATGCCATCAAAAAAGATATGAAAGAAATTCTAGAAGAACTTTATGAAATTAGAAGCAGTGCCTGTTTTCAGAATTTGGATTCATTACTCATCCAAATAAAATTCTTTGCCGATGTCCTCATCTTCTACAGAAATGCTCAAAAGAAATTCTTTCCTTCAGTTTTGAGTGAACTTGGTTATGGCTGGTTGACCAAGTGTACTGAACAGTTTCTCAGTGAAAGTCACATTGAAGATTTACAGCGCTTGCTATTCTATAATGCTGAAAGTGGTATGCCTCTGTGCAAATTTGTAGAGGAGCTTTACAGAGAGCTCAAATTATTTATGACAGGGCTCAACAATCAATTTGCTTTCCAAGAAACTGAGGTATTTACTGTCATTCAAATGAATTGCGGCAATGGAATGTTGGAGATGCTCATGAGCTTTATCTTGCATATGATGCCACTTGGGTTGCTGAAGTGTGTGATAACTTGGTTTTCAGTTCACTTGTCTGAAATTGAATCCAGGTCCATTCTCTCTTGCATGAAGCAAGGAAATCCTTTTGTCCATGGATCTGTTGCCTTGCTATTACAAGAGTGGTTCCGTGTTGGTTATTCAGGTAAAACCTCTACTGAAAAATTCCGACAAGACTTGTGGCATATTTTTAAAAGCAAAAGCTCTTTGTTAACTGAGCAAGTAAAGAAAGCTCCTGGGTTTTCTTTCTTAAATTATGACAAACCTCACAAAGGATCTATTATCTCTGGAAAGAATTGTTTGTCCTATTCATCATCTGGATTCAACAATGTGGTTAAGTATGAGACACCATACTCTACAAGAATTAATTTGCATATATTTTTCCCTGCCACAGCAATGAAGCTAAATCACTGTCCTAGATTCCAGGCAACAAATAGTTCTTCTATTTCCTTTCTTGATGATCCAAAACCAATTGACTTAATATTTTTCGTTCACAAGGCTATCAAGAAAGATTTGGATTACCTTGTTCATGGATCAGCTGAGTTAGAAAAAAATGTTGATTTGCTAGTGGATTTCAGGAAACGATTCAATCTTATAAGCTTTCTTCATCAAATCCATCGTGAGACAGAGGATGAGATAGCATTTCCAGCCTTGGAGGCAATGACTGAAGCAAAAAACATTAGTCTCTCCCATACCATTGATCACGAACTTGAAGTTCAACACTTCAATAAAATATCCTGCATCCTTGATAAGATGTCTGATCTACATCTTTCAGTTTCTAGTTTTAAAACAAATACATGGGAGAAGAGAATGCTGAAGCATAATCAACTGTGTAGAAAGCTGCGAGAAATTTGCAAATCAATGCACAAAATACTTTCCGACCATGTCAATCGTGAAGAAATTGAAATTTGGCATTTAATTAGAGACTTCTCCAATAGTGAGCAAATAAAAATTGTAGGTTGTATGCTTGGAAGAATTAGCGCAGAAATATTACAAGATATGATACCCTGGTTAATGGCATCTTTAACCCCAGAAGAACAGCATGTTTCAATGTTCTTATGGTCGATGGTTACTAAAAACACAATGTTTGATGAATGGTTAGCTGAGTGGTGGGAGGGGTACAGTATAGCAAAGGAAACAGAGAGATCAAATGATCCTCCCGTGCAGACTGTTGAACCATTGGAGATCATATCTAAATACTTATCTGAAGAAGTTCTTGATGAACTACGAGAAGAATCCTCTTCCAACAAGAGCATACTTCTTTCACAGGATCATTCTTGTGATAGTAAAGATCTGTCTCACAATTGCAATCTTGACGGCAAAGCCAAGGTTCTTAAAGCAAAACAAAATAGTAGCGAATGTTTAGAAGGCGGAAATCAAATGAGTGATAATAGCAAACAGGCATTCACTAAAGTAACAGAGATCACATGTTCAATCAATGATATAGGTCAGTCTTTTCAGTTCTCTGTAAACTCTGGTTTTTATGACCGTCTTATGAAAATAAGTCAAGATGATCTGGAGATAGCCATAAGAAAGGTATCTCGTGACTCTTCTTTAGATCTGCAGAAAAAGTCGTATATAATCCAGAACCTGCTAATGAGCCGTTGGATTGTTAGACAGCAGATATCTTGTTCAGAAGTCGCTGTCACAAGCAATGGGCAGGAATTCCCTGGGCAGCTTCCATCTTATAGAGATCCTCTCAAACAAATCTACGGGTGTAAACACTACAAGAGAAACTGTAAGCTTTTTGCTGCCTGTTGCAACCAACTTCATACATGCATACATTGCCATAATGAGGAGGTATCAGATCATTCAATTGACAGGAAATCTATTACAAAGATGATGTGCATGAAGTGCTTGATGATTCAGCCAATCAGTGCCATGTGTTCAACAGCTTCTTGCAGAAACTTTTCCATGGCAAAATACTACTGCAGGATCTGTAGATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGAAAGGGCTTGGGTGTGGACTACTTTCATTGTATGAACTGCAATGCTTGTATGTCTCGTTCCCTCACTGTACATATTTGCAGGGAGAAATCATTAGAGGATAACTGCCCAATTTGTCATGAATATATCTTTACATCCTGCGCTCCAGTGAAGGCCCTTCCATGTGGTCATGCCATGCACTCAATTTGTTTTCAGGAATATACCTATTTTAACTATACCTGCCCAATATGTTACAAGTCACTTGGAGACATGCAGAATGCCTTGCAGGTATATTTTAGGATGTTAGATGCATTATTGGCAGAAGAGAAAATTCCAGACGAGCATTTGGGTCAAACTCAGCTGCAGGTTATACTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCACAAATGCCCCTCTTGTGGTTCCTACAATACCAGAGTTCTATGA 3810 0.3879 MDGGETHLCAPDKEENDEDDAPDCLSRVRLVDAPILLFVCYHRALRGELNELRRLAETSSLQNVSHSRELILKLHRRFEFFKLALKYHCVAEDEVIFPALDVHVKNVVCTYSLEHNCTEDLFTSIFHYLDELMNPNENLSEMFQELIYCMGILKTTMFQHMLKEEEQVFPLLMQKFSTKEQALLVWQFICSVPIMLLQQVLPWMASFLSADKQAELRQCLNEIAPMEKELQEVLISWLGSNVQTFTEVWFLSKEVQCADPLNMETSLGMNSSNRNFRTISNQKKENFFDVEDRSNKVNVLHLWHDAIKKDMKEILEELYEIRSSACFQNLDSLLIQIKFFADVLIFYRNAQKKFFPSVLSELGYGWLTKCTEQFLSESHIEDLQRLLFYNAESGMPLCKFVEELYRELKLFMTGLNNQFAFQETEVFTVIQMNCGNGMLEMLMSFILHMMPLGLLKCVITWFSVHLSEIESRSILSCMKQGNPFVHGSVALLLQEWFRVGYSGKTSTEKFRQDLWHIFKSKSSLLTEQVKKAPGFSFLNYDKPHKGSIISGKNCLSYSSSGFNNVVKYETPYSTRINLHIFFPATAMKLNHCPRFQATNSSSISFLDDPKPIDLIFFVHKAIKKDLDYLVHGSAELEKNVDLLVDFRKRFNLISFLHQIHRETEDEIAFPALEAMTEAKNISLSHTIDHELEVQHFNKISCILDKMSDLHLSVSSFKTNTWEKRMLKHNQLCRKLREICKSMHKILSDHVNREEIEIWHLIRDFSNSEQIKIVGCMLGRISAEILQDMIPWLMASLTPEEQHVSMFLWSMVTKNTMFDEWLAEWWEGYSIAKETERSNDPPVQTVEPLEIISKYLSEEVLDELREESSSNKSILLSQDHSCDSKDLSHNCNLDGKAKVLKAKQNSSECLEGGNQMSDNSKQAFTKVTEITCSINDIGQSFQFSVNSGFYDRLMKISQDDLEIAIRKVSRDSSLDLQKKSYIIQNLLMSRWIVRQQISCSEVAVTSNGQEFPGQLPSYRDPLKQIYGCKHYKRNCKLFAACCNQLHTCIHCHNEEVSDHSIDRKSITKMMCMKCLMIQPISAMCSTASCRNFSMAKYYCRICRLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLTVHICREKSLEDNCPICHEYIFTSCAPVKALPCGHAMHSICFQEYTYFNYTCPICYKSLGDMQNALQVYFRMLDALLAEEKIPDEHLGQTQLQVILCNDCEKKGAAPFHWLYHKCPSCGSYNTRVL 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0854 1269 CDD Hr-like 42 170 - -
Sto12g0854 1269 SMART ring_2 1157 1198 IPR001841 -
Sto12g0854 1269 Gene3D nmb1532 protein domain like 33 190 - -
Sto12g0854 1269 Gene3D nmb1532 protein domain like 607 778 - -
Sto12g0854 1269 ProSiteProfiles Zinc finger CTCHY-type profile. 1093 1156 IPR017921 -
Sto12g0854 1269 CDD Hr-like 613 758 - -
Sto12g0854 1269 Pfam Zinc-ribbon 1210 1267 IPR039512 -
Sto12g0854 1269 CDD RING-H2_Pirh2 1156 1199 - -
Sto12g0854 1269 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 25 1269 - -
Sto12g0854 1269 Pfam CHY zinc finger 1027 1103 IPR008913 GO:0008270
Sto12g0854 1269 ProSiteProfiles Zinc finger CHY-type profile. 1020 1090 IPR008913 GO:0008270
Sto12g0854 1269 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 1269 - -
Sto12g0854 1269 SUPERFAMILY RING/U-box 1144 1205 - -
Sto12g0854 1269 MobiDBLite consensus disorder prediction 1 21 - -
Sto12g0854 1269 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Sto12g0854 1269 SUPERFAMILY Zinc hairpin stack 1094 1148 IPR037275 -
Sto12g0854 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1150 1200 IPR013083 -
Sto12g0854 1269 Pfam Ring finger domain 1155 1198 IPR001841 -
Sto12g0854 1269 Gene3D - 1234 1269 - -
Sto12g0854 1269 ProSiteProfiles Zinc finger RING-type profile. 1157 1198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0854 Sto-Chr12 5356685 5367040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0854 33 853 C2H2 Transcription Factor Family AT3G18290 30.518 2.07e-112 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0854 K16276 - gmx:100802706 1769.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0854 12 5356685 5367040 Sto12g0854 12 5356685 5367040 ECH