Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0847 ATGGTGAGGCCTCCATGCTGCGAGAAGCTAAAAAGGGGTGTTTGGACTGAGGAAGAAGATGCAAAGATACTCGCATTTGTCTCAAAGCATGGATCTGGTAACTGGACTTCTCTTCCCAAAAAAGCAGGGTTGAAGAGGTGTGGAAAAAGTTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGATCTCAACCATGATAGCTTCACACCCCAAGAAGAGGATTTAATTGTTAAGCTTCATGCAGCCATAGGTAGCAGGTGGTCCATAATAGCCCAACAACTTCCTGGGAGAACAGACAACGATGTAAAAAACTACTGGAACTCAAAGCTGAAGAAGAAGCTGTCTGAAATGGGAATAGACCCTGTGACCCACAAGCCCTTCTCCAAACTCCTAGCAGATTATGGCAACATTGGAGGCATTCACAAACCAAACACCCGAATTGGCTCTCTCAGCAAAGACTTCAAGAATGCAGTATTGCTCAAATCAGACTCCTCATCATCACTAACTAATTATCATTTCCCCCAAATGGAGCTTCCAATTGAGAAGGAGACTAATATGAATATCCTGCCCGTTAGTATGTTTGGGGAATCATCGTCGTCACAAGAAAGCTTGTCTTTCTCATTCAGTTGGAATGACTTTCTTCTTGAAGATGTTTTACCACCTAATAATGATGATAACGTAATAGAGATCAATGAAAGAGAGGTGATGAAGTCGTCATCATCACAACAGGTTCAGGTTCAGGTCCAGAATACTGAATTCCAGCTTTCCTcgtcttcttcatcttcctctgaGATCTCGTTTGTAGAAGCTATGATTCATCAAGAAAATGAGATGTTCTTGAATTTTCCTCATCTCATGGAGGAACCACCATCCAACTACTGA 882 0.415 MVRPPCCEKLKRGVWTEEEDAKILAFVSKHGSGNWTSLPKKAGLKRCGKSCRLRWTNYLRPDLNHDSFTPQEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNYWNSKLKKKLSEMGIDPVTHKPFSKLLADYGNIGGIHKPNTRIGSLSKDFKNAVLLKSDSSSSLTNYHFPQMELPIEKETNMNILPVSMFGESSSSQESLSFSFSWNDFLLEDVLPPNNDDNVIEINEREVMKSSSSQQVQVQVQNTEFQLSSSSSSSSEISFVEAMIHQENEMFLNFPHLMEEPPSNY 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0847 293 Gene3D - 6 65 - -
Sto12g0847 293 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Sto12g0847 293 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Sto12g0847 293 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Sto12g0847 293 PANTHER F14D16.11-RELATED 1 289 - -
Sto12g0847 293 CDD SANT 67 110 IPR001005 -
Sto12g0847 293 SMART sant 11 61 IPR001005 -
Sto12g0847 293 SMART sant 64 112 IPR001005 -
Sto12g0847 293 CDD SANT 15 59 IPR001005 -
Sto12g0847 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Sto12g0847 293 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Sto12g0847 293 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Sto12g0847 293 Gene3D - 66 127 - -
Sto12g0847 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Sto12g0847 293 PANTHER F14D16.11-RELATED 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0847 Sto-Chr12 5316653 5318106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0847 1 288 MYB Transcription Factor Family AT3G28470 41.590 1.82e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0847 Myb_DNA-binding 6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0847 K09422 - gmx:100795381 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0847 12 5316653 5318106 Sto12g0847 12 5316653 5318106 ECH