Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0833 ATGCTTGCCGCCGCCGCCGATGGTTTCAAGCCGCAACTGCCGGAGGATTCGCCCTCCGCCGCGGCGGAATTCCACGTTCTCGCTGTGGATGACAGTTATGTTGATCGCAAGGTCATTGAACGCTTGTTGAAGATTTCTTCTTTCAAAGTGACGGTAGTTGAGAGTGGAACCAGAGCTTTGCAATACCTAGGTTTGGATGGAGAGAAGCAGAGCTCCATTGGAGTTGATCATAGTGCCAAGGTTAATCTTATAATGACCGACTATTCCATGCCTGGCATGACTGGATATGAGCTCCTCAAGAAGATCAAGGAATCATCTGTTTTTAGAGAGATTCCAGTGGTGATCATGTCATCTGAGAATATCTTGACACGAATTGATAGGTGCTTGGAGGAAGGAGCAGAGGAGTTTCTCTTAAAGCCAGTGAAGTTGTCCGATGTGGAGCGCTTGAAGGAGTTCATAATGAAGGGTgaagaaggaaaggaaaatggagacaaaaaatctaaaaagagaaagagatccgatgattacaataataataataatctgtTTCCCTCACCTCCATTCTCATCACTCTCTCATCCTTGTGATCCATCCTCTTCACCATCTGCATTATCCTCAAAGAATTCTATTCTGCGAGCAGAGATTGAATAG 651 0.4117 MLAAAADGFKPQLPEDSPSAAAEFHVLAVDDSYVDRKVIERLLKISSFKVTVVESGTRALQYLGLDGEKQSSIGVDHSAKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENILTRIDRCLEEGAEEFLLKPVKLSDVERLKEFIMKGEEGKENGDKKSKKRKRSDDYNNNNNLFPSPPFSSLSHPCDPSSSPSALSSKNSILRAEIE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0833 216 Gene3D - 25 181 - -
Sto12g0833 216 MobiDBLite consensus disorder prediction 177 209 - -
Sto12g0833 216 MobiDBLite consensus disorder prediction 158 176 - -
Sto12g0833 216 Pfam Response regulator receiver domain 26 146 IPR001789 GO:0000160
Sto12g0833 216 ProSiteProfiles Response regulatory domain profile. 25 154 IPR001789 GO:0000160
Sto12g0833 216 MobiDBLite consensus disorder prediction 158 216 - -
Sto12g0833 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 206 IPR045279 GO:0009736
Sto12g0833 216 CDD REC_typeA_ARR 26 149 - -
Sto12g0833 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 12 206 - -
Sto12g0833 216 SUPERFAMILY CheY-like 24 149 IPR011006 -
Sto12g0833 216 SMART REC_2 24 153 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0833 Sto-Chr12 5228485 5229536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0833 6 158 Response Regulator Gene Family AT3G48100 71.519 2.82e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto12g0833 Response_reg 1.2e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0833 K14492 - gmx:100306152 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1474 3 10822829 10824398 Sto12g0833 12 5228485 5229536 ECH
Sto12g0833 12 5228485 5229536 Sto12g0833 12 5228485 5229536 ECH