Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0829 ATGGCGACCCCAGTGCCGAGTCGACTGCTATTCATAGATGGCGACTGGAAAGAACCACTCCTCAAGAAACGAATTCCCATCATCAATCCCTCCACTGAAGAAATAATTGGGGATATTCCAGCTGCCACTTCGGAAGATGTGGAGCTTGCAGTTGCTGCTGCTCGAAGAGCACTCACCCGGAACAAGGGTTCAGACTGGGCAACGGCTTCCGGCTCGGTTCGTGCTCGCTATCTCCGTGCTATCGCTGCTAAGATTACAGAGAGAAAGTCTGAGCTAGCAAAACTCGAAGCATTAGACTGTGGAAAACCACTGGATGAAACGGCATGGGACATGGATGATGTTGCTGGTTGCTTTGAGTTCTATGCTGACCTTGCTGAAGGATTGGATGCAAAGCAAAAGGCTCCTGTATCTCTTCCGATGGACAATTTCAAGTCCTATATTCTTAAGGAGCCCATTGGGGTAGTTGGATTAATTACTCCATGGTATCTTCCGCTTCTGAATTATCCTCTGTTAATGGCTACATGGAAAGTTGCTCCTGCTCTTGCTGCTGGTTGTACTGCAATATTAAAGCCTTCAGAATTGGCATCTGTTACCTGTTTGGAACTGGCTGATATCTGTAAAGAAGTGGGCCTTCCTCCAGGTGTCTTAAATATTCTCACTGGATTAGGCCCTGAAGCTGGTGCTCCTTTGGCTTCCCATCCTCATGTGGACAAGATTGCCTTTACTGGGAGCTCTGCAACTGGGAGCAAGGTTATGACAGCTGCAGCTCAACTAATCAAGCCTGTTTCATTAGAGCTTGGTGGAAAAAGTCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAAGCTGCTGAGTGGACTTGCTTTGGCTGCTTCTGGACTAATGGTCAAATATGTAGTGCAACATCTCGTCTTATTGTACATGAAAGTATAGCGACTGAGTTTTTGAATAGACTTGTGAAATGGATCAAAAACATCAAAATAGCAGATCCCTTTGAAGAAGGTTGCAGGCTAGGCCCAATTGTTAGTGAGGGACAGTATGGAAAAATATTGAAGTTCATTGAAACTGCCAAGAGTGAGGGTGCCACAATTTTCACTGGTGGGTCTCGCCCAGAGCATTTAAAGAAGGGATTCTTCATTGAACCAACCCTTATAACTGATGTAACTACGTCCATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTTCTGTGTGTTAAAACGTTTAGCAATGAGGAAGAAGCTATTGAGCTAGCAAATGACACCCATTATGGATTGGGTGCTGCTGTAATATCAAATGATCTAGAAAGATGTGAGCGTGTAACCAAGGCTTTTCAGGCCGGAATTGTTTGGATCAATTGCTCTCAACCATGCTTCACTCAAGCTCCATGGGGAGGCAAAAAACGTAGTGGCTTTGGTCGTGAATTAGGAGAATGGTATGGTTCTCAGGGTCTTGAGAACTACATAAACGTGAAGCAAGTCACTCAGTATACCTCTGATGAACCATGGGGCTGGTACCCCAATCCTTCAAGGCTGTGA 1539 0.4503 MATPVPSRLLFIDGDWKEPLLKKRIPIINPSTEEIIGDIPAATSEDVELAVAAARRALTRNKGSDWATASGSVRARYLRAIAAKITERKSELAKLEALDCGKPLDETAWDMDDVAGCFEFYADLAEGLDAKQKAPVSLPMDNFKSYILKEPIGVVGLITPWYLPLLNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELADICKEVGLPPGVLNILTGLGPEAGAPLASHPHVDKIAFTGSSATGSKVMTAAAQLIKPVSLELGGKSPIIVFEDVDLDKAAEWTCFGCFWTNGQICSATSRLIVHESIATEFLNRLVKWIKNIKIADPFEEGCRLGPIVSEGQYGKILKFIETAKSEGATIFTGGSRPEHLKKGFFIEPTLITDVTTSMQIWREEVFGPVLCVKTFSNEEEAIELANDTHYGLGAAVISNDLERCERVTKAFQAGIVWINCSQPCFTQAPWGGKKRSGFGRELGEWYGSQGLENYINVKQVTQYTSDEPWGWYPNPSRL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0829 512 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 492 IPR016162 GO:0016491
Sto12g0829 512 CDD ALDH_F10_BADH 27 496 - -
Sto12g0829 512 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 463 IPR016163 GO:0016620
Sto12g0829 512 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 509 - -
Sto12g0829 512 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 509 - -
Sto12g0829 512 Pfam Aldehyde dehydrogenase family 23 494 IPR015590 GO:0016491
Sto12g0829 512 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 292 303 IPR016160 GO:0016491
Sto12g0829 512 SUPERFAMILY ALDH-like 9 495 IPR016161 GO:0016491
Sto12g0829 512 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 264 271 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0829 Sto-Chr12 5212755 5217468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0829 1 510 Aldehyde Dehydrogenase Gene Family AT1G74920 81.373 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0829 K00130 - gmx:100170731 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1470 3 10785546 10791866 Sto12g0829 12 5212755 5217468 CCT
Sto12g0829 12 5212755 5217468 Sto12g0829 12 5212755 5217468 ECH