Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0827 CTGAAGTCTCTGTCTTCACAACGCAGCCTCGCATCAATCCCTTCCCTCAACTCACaatctcatcatcatcaccatccaCCAAACCATCCTTCCACCACCACATACCACCAGTGCCTCACAACTCTAAAAGGCCCCACATCATCCTACACATCCTCTCTCGCCCTCTCGGGGACATTCCTCTACACAGGCTCATCAGACAGAGAAATCCGATCATGGGATCGCACCCTTTTAACCTCTCACTCTGAGCTTCACCCTCCTCATCAAGTGGCACTTTCAGGAAAGGGTGCAGTGAAGTCCATAGTGGTTCAATCTGATCATCATAAGCTCTTCAGTGCCCACCAAGACCACAAAATCCGAGTCTGGAAGAAGACCAGCAACCACCAAAACAAGTACACGTGTGTAGCCACACTCCCAACACTAGGCGACCGTGCTTCCAAAATCTTGAGCCCCAAGAACCAAGTCCAAATCAGGAGGCACAAGAGATGCACGTGGGTCCATCACGTGGACACAGTCTCTGCTCTGGCCTTGTCCAAAGACCACACCTTGCTCTACTCAGTTTCATGGGATAGGACCCTCAAAATCTGGCGAACCACAGACTTCAGCTGTTTGGAATCAGTGAGCAACGCACACGATGACGCCATAAATGCGGTTGCAGTTTCTAACGATGGGAGTGTGTACACGGGATCAGCAGATAAGAGAATCAAAGTGTGGAAGAAAGGGGAAGGAGGAGAAAAGAAGCATGCTTTGGTAGATTGCTTAGAGAAACACAAGTCTGGGATCAATGCCTTGGCTCTGAGCAACGATGGGTGTGTGCTGTATTCGGGTGCATGTGATAGTGGTTCTGCAGATAAAACCATTCGTATATGGAGAGGGGTTGAGAGAGAGTACTGTTGTTTGGCGGTTTTGGAAGGGCACAGAGGGGCGGTTAAGTGTATAACTGCGACGGTTGATCGTTGTGATTCCTCTGAAGCTTGTTGTTGTGTAGTGTACAGTGGCAGTTTGGACTGTGACATTAGGATGTGGCAGATTGTTGTTCCTGTTGTTTAG 1047 0.4823 LKSLSSQRSLASIPSLNSQSHHHHHPPNHPSTTTYHQCLTTLKGPTSSYTSSLALSGTFLYTGSSDREIRSWDRTLLTSHSELHPPHQVALSGKGAVKSIVVQSDHHKLFSAHQDHKIRVWKKTSNHQNKYTCVATLPTLGDRASKILSPKNQVQIRRHKRCTWVHHVDTVSALALSKDHTLLYSVSWDRTLKIWRTTDFSCLESVSNAHDDAINAVAVSNDGSVYTGSADKRIKVWKKGEGGEKKHALVDCLEKHKSGINALALSNDGCVLYSGACDSGSADKTIRIWRGVEREYCCLAVLEGHRGAVKCITATVDRCDSSEACCCVVYSGSLDCDIRMWQIVVPVV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0827 348 Pfam WD domain, G-beta repeat 253 289 IPR001680 GO:0005515
Sto12g0827 348 Pfam WD domain, G-beta repeat 202 238 IPR001680 GO:0005515
Sto12g0827 348 Pfam WD domain, G-beta repeat 165 195 IPR001680 GO:0005515
Sto12g0827 348 Pfam WD domain, G-beta repeat 297 341 IPR001680 GO:0005515
Sto12g0827 348 Pfam WD domain, G-beta repeat 37 73 IPR001680 GO:0005515
Sto12g0827 348 Pfam WD domain, G-beta repeat 93 122 IPR001680 GO:0005515
Sto12g0827 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 238 - -
Sto12g0827 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 164 205 IPR001680 GO:0005515
Sto12g0827 348 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 3 278 IPR045182 -
Sto12g0827 348 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 279 346 IPR045182 -
Sto12g0827 348 Gene3D - 146 345 IPR015943 GO:0005515
Sto12g0827 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 238 IPR001680 GO:0005515
Sto12g0827 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 164 195 - -
Sto12g0827 348 MobiDBLite consensus disorder prediction 1 36 - -
Sto12g0827 348 Gene3D - 29 145 IPR015943 GO:0005515
Sto12g0827 348 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 3 278 - -
Sto12g0827 348 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 279 346 - -
Sto12g0827 348 SUPERFAMILY WD40 repeat-like 46 343 IPR036322 GO:0005515
Sto12g0827 348 SMART WD40_4 199 238 IPR001680 GO:0005515
Sto12g0827 348 SMART WD40_4 35 73 IPR001680 GO:0005515
Sto12g0827 348 SMART WD40_4 83 122 IPR001680 GO:0005515
Sto12g0827 348 SMART WD40_4 295 342 IPR001680 GO:0005515
Sto12g0827 348 SMART WD40_4 157 196 IPR001680 GO:0005515
Sto12g0827 348 SMART WD40_4 246 290 IPR001680 GO:0005515
Sto12g0827 348 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0827 Sto-Chr12 5203381 5204565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0827 97 343 Acyl Lipid Metabolism Gene Families AT3G18860 23.887 1.33e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1468 3 10755328 10757674 Sto12g0827 12 5203381 5204565 CCT
Sto3g1468 3 10755328 10757674 Sto12g0827 12 5203381 5204565 ECH
Sto12g0827 12 5203381 5204565 Sto12g0827 12 5203381 5204565 ECH