Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0825 ATGGGAGGCAATGGCAAGCACAGGTGGAAAATCTCTTTTCATCGTCCTTCTTCCTCAAGCTCCTCAAAAGAGCCTCCCAAGGAGTTCCTATGCCCAATTTCTGGATGTTTGATGTCGGATCCCGTCGTTGTGGCTTCCGGTCACACCTTTGAAATGCTTGCTGTTAAAGTCTGCAGAGATTTGGGTTTCTCTCCCACGCTTCAAGACGGCTCCACCCCTGATTTCTCCACCACCATTCCCAATTTGGCCATGAAAACCACGATTTCCAATTGGTGCGTTAAGTCCGGCGTGGGAAACCCGCGCCCACCCGATTATAGCTCCGTCCAGAGGCTTGTCCGTGCAGCCATGGCGTCGTCCCAGCCTGATCTTGGGGATTCCGATAACGATTTACTGCGGGCCGTCGCGGATAATCCACCTGTGATTTTCTCTCACGCCGCCACGGAGTTGAATCCCCACGTCATCCACTTCAGCTCCTCTTCAATATCCAAGGAATCTGCAGTCGTCGCGGCGAGTATTGCCGAGACGCCTTTACCCCTCGCGACTCGTCCTACCTGTTATTCTTCATCGGCTTCTTCTCTCGAGATTAACGATAACGAAGTCCAGAATCAGAACCCTAATGGCCCAATTTCCGAAGAAGAGGAGAAATTAGTGTTGAAGCTGAGGAGCACCGAGGCCTCTGAGCAGGAAGAAGCCGTTATTTCTCTGAGAAACATCACAAGGACCAGAGAGGACACTAGGGTTTCTCTCTGCACGCCTGCGTTACTCTCATCACTCCGATCGTTGATCGTCTCGAGGGAATCCGTCGTACAAGTAAACGCCGTCGCTTCGTTGGTGAATTTCTCCCTGGAAAAATCCAACAAGGTGAAAATCGTGAGGTTGGGATTTATTCCTTTTCTCATCGACGTTCTGCAAGAGGGGTTCCCGGAGTCGCAAGAACACGCAGCGGGAGCTCTATTCAGCTTGGCATTGGACGACGAGAACAAAATGGCCATCGGAGTTCTGGGCGCGTTGGAGCCACTCATGTACGCGTTGAGATCCGAATCGGAACGGACTCGGCAGGACTCGGCCCTCGCGTTGTACCATCTGACCTTGGTTCAGAGCAACAGGGTGAAGTTGGTGAAGCTCGGGGTGGTGCCGATGCTGCTATCGATGGTGAAATCGGGGGATTCGACGAGCCGGGTTTTGCTGGTTTTGTGTAATCTTTCGGCGTGCACGGAGGGACGGACGGCGATGCTGGACGCGAATGCGGTGGAGTGCCTGGTGGAGACGCTGAGGGGGAAGAAGGAGGGGCCGGAGTCGGAGGCGATGACGGAGAACTGTGTGGCGGCGTTGTACGGAATGAGTCATGGAAGCTTGAGGTTCAAAGGGTTGGCGAAGGAGGCAATGGCTGTGGAGGTGTTGAGGGAGGTTGTAGAGAAGGGAACAGAGAGGGCGCGTGAGAAGGCCAGGAGGATACTGCAAATGATGAGGGCAGGAGAAGGGGATGATGAAAACGGTTCGAGGTTTGATGGAGCGATGGAACCGGGCGGGTTGAGTCGAACCCGGTTCAGAATTGGTGGGGGGAGGAATGTGAACGTAGCCAACTCGACTACATTTTAA 1599 0.5385 MGGNGKHRWKISFHRPSSSSSSKEPPKEFLCPISGCLMSDPVVVASGHTFEMLAVKVCRDLGFSPTLQDGSTPDFSTTIPNLAMKTTISNWCVKSGVGNPRPPDYSSVQRLVRAAMASSQPDLGDSDNDLLRAVADNPPVIFSHAATELNPHVIHFSSSSISKESAVVAASIAETPLPLATRPTCYSSSASSLEINDNEVQNQNPNGPISEEEEKLVLKLRSTEASEQEEAVISLRNITRTREDTRVSLCTPALLSSLRSLIVSRESVVQVNAVASLVNFSLEKSNKVKIVRLGFIPFLIDVLQEGFPESQEHAAGALFSLALDDENKMAIGVLGALEPLMYALRSESERTRQDSALALYHLTLVQSNRVKLVKLGVVPMLLSMVKSGDSTSRVLLVLCNLSACTEGRTAMLDANAVECLVETLRGKKEGPESEAMTENCVAALYGMSHGSLRFKGLAKEAMAVEVLREVVEKGTERAREKARRILQMMRAGEGDDENGSRFDGAMEPGGLSRTRFRIGGGRNVNVANSTTF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0825 532 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Sto12g0825 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 522 - -
Sto12g0825 532 SMART arm_5 404 449 IPR000225 GO:0005515
Sto12g0825 532 SMART arm_5 365 403 IPR000225 GO:0005515
Sto12g0825 532 SMART arm_5 283 323 IPR000225 GO:0005515
Sto12g0825 532 SMART arm_5 324 364 IPR000225 GO:0005515
Sto12g0825 532 Pfam U-box domain 26 93 IPR003613 GO:0004842|GO:0016567
Sto12g0825 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 97 IPR013083 -
Sto12g0825 532 Pfam Armadillo/beta-catenin-like repeat 324 363 IPR000225 GO:0005515
Sto12g0825 532 MobiDBLite consensus disorder prediction 493 514 - -
Sto12g0825 532 SUPERFAMILY RING/U-box 10 99 - -
Sto12g0825 532 MobiDBLite consensus disorder prediction 1 26 - -
Sto12g0825 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 331 IPR000225 GO:0005515
Sto12g0825 532 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Sto12g0825 532 Gene3D - 206 499 IPR011989 -
Sto12g0825 532 PANTHER U BOX DOMAIN-CONTAINING 1 522 - -
Sto12g0825 532 SUPERFAMILY ARM repeat 216 489 IPR016024 -
Sto12g0825 532 CDD RING-Ubox 30 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0825 Sto-Chr12 5189743 5191341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0825 1 532 U-box Gene Family AT5G65200 53.142 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0825 - - aip:107643932 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1465 3 10723533 10724615 Sto12g0825 12 5189743 5191341 ECH
Sto12g0825 12 5189743 5191341 Sto12g0825 12 5189743 5191341 ECH