Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0821 ATGGCAACATTTGCTGGTACTACCCAGAAATGCAAGGCTTGTGAAAAGACAGTCTATGTAATGGATCAGCTCACTGCTGACAACAAGATTTACCACAGGTTTTGCTTCAGATGTCACCACTGCAAGGGTACCCTCAAGCTGAGTAACTTTAGTTCCTTTGAGGGCGTTCTATATTGCAAGCCTCATTATGATCAACTCTATAAGATGACTGGAAGCTTAGAAAAAAGTTTTGAAGGTGAATTTCTGCTTTCTGTTATTGGATTGcttctaataaGTACTCCAAGAACTGCTAGAGTTGTGAGATCTGCTGATCAGGTCCAAACAAATGGCAAGGTTTCAAGATTGTTTGCTGGAACTCAGGAAAAGTGTGTTTCCTGCAACAAAACAGTGTACCCAATTGAAAAGAATAAATGGCTGGATAACATAACATTGTTGGTACCATATTTCCCTACTGGTGTGGAAGAGAGAGTGACAACGAGGACTTGCTACTTCCTAGTGTTTGTTTTGGACACTTGGATGGAATCCTGCGATAGGGAAAAGAGGTCGCTGTTGATGGCAAATCTTACCACAAGCCTTGCTTCAGGTGCTCCCATGGAGGCTGTTTAA 606 0.4158 MATFAGTTQKCKACEKTVYVMDQLTADNKIYHRFCFRCHHCKGTLKLSNFSSFEGVLYCKPHYDQLYKMTGSLEKSFEGEFLLSVIGLLLISTPRTARVVRSADQVQTNGKVSRLFAGTQEKCVSCNKTVYPIEKNKWLDNITLLVPYFPTGVEERVTTRTCYFLVFVLDTWMESCDREKRSLLMANLTTSLASGAPMEAV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0821 201 PANTHER OS06G0237300 PROTEIN 1 135 IPR045268 GO:0051015
Sto12g0821 201 CDD LIM1_SF3 7 68 - -
Sto12g0821 201 Pfam LIM domain 11 65 IPR001781 -
Sto12g0821 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Sto12g0821 201 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Sto12g0821 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Sto12g0821 201 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Sto12g0821 201 Gene3D Cysteine Rich Protein 5 75 - -
Sto12g0821 201 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 135 - -
Sto12g0821 201 SMART lim_4 10 62 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0821 Sto-Chr12 5172483 5174233 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto12g0821 LIM 3.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0821 K09377 - qsu:112031644 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1448 3 10630253 10632788 Sto12g0821 12 5172483 5174233 CCT
Sto12g0821 12 5172483 5174233 Sto12g0821 12 5172483 5174233 ECH