Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0812 atgaatGATGATGAGGATAGGTTTAATTACCTGAGGGAGAGGAAGGCAGGCGAGAATATCAACGAAGAAATCGGATTTGAGATAGCGAACGGCGATGAGGTAGGGATCGGTGACGAGATCACCGAGGCCGAAACTGCGGGAAGTGTAGTAGGCGGTACGGAATTTGAGAACAACGTGGAAGACGAAGAAGAGATCGGTGAGGGTGCGGAAGAAAGTGACGAAGACGCCGAGGGCGATGTCCATTTGCATGCAATTCTCTTTGCCGATGATGgggaaatagaaatagagaGGGTCGAGGAAGAGGGCGGCGAAGCAGGCATAGAGGAAGATGCGGTTCCATCGGTCGACGAATTTGGATTTGGGATCAAGGATTTGCAGGAAATATCTGTACAGTCACTGGAATTCTTTGTAGTTGGAGCAGATAAATTCTTTCTTTCAGTTCCATTCCAGATGTATGGATACATGTATTTCATGAATTGGTATGATGCTCGGCGTTTTATCCAGCCGTTCTCAGATGTAACGCTTTCCTCTTCACGGGCTTCGGATGATAAGACAGAGGCgttctttcttttctttgggTCAATTCTTCAAAGACCTACTCTTACAGCTCACATACTGGAAAATTCAATACAGATGGCAGCAAAATCATACAGTGATTTGCTAGAATTGTCGTCACAGGATAAATCAAATTCCCCTCAAGTTCCAAGAGATATATCGCGTGTTATGTCTGATCCAGTAATTATGTTCAATAACAATGATGATGCTTCCTCATCAGAATCTGGTCCAAAGCTAATCATAGTAGCAAATTTTCTTCCTCTGAAGGCTGAAAAGGATACATCTGGCAGATGGCGCTTTAGCTATGATGAAGATTCAATTTATTTGCAGCTAAGGGATGGTATTCCTTCTGATACTAAAGTTGTTTATGCGGGATGTCTAACTGTTGATGTTGATGCAAGTGAAGAAGAACAAGTTAGTCAAGAGTTAAAGGTGCAATTCAAATGCTACCCTATCTTTCTTCCTTCAGACCTCaagaaaaatttttataatGGATTCTGCAAGCAGTATTTGTGGCCTCTATTCCATTCCATGTTACCCATGAATCCAGCTTACTGCAATCGCTACGATGGTTCACTTTGGAGGGCTTATGTTAATGCTAACAAGAAATTTTACCTCGGGATCAAGAAAATTTTTGCTCCAGATGATTATGTATGGGTTCATGATTATCATCTTATGCTCCTCCCAACACTTCTGCGCATGCGGTTTATTACGATCAAGCTAGGATTTTTCCTCCATAGCCCGTTTCCTTCTTCAGAAATTTTTAAGACTCTGCCTGTCAGAAATGAAATTTTGAGAGCATTTCTTAATTCAGATTTAATAGGATTTCATACATTTGATTATGCTCGCCATTTTCTGTCTTGCTGCAGTCGGATGTTCGGTTTGGAATATGAATCCAAAAGAGGTTACATTGGGATTGATTACTTTGGCCGTacaataaacattaaaattttgcCTGCAGGGATTCATATCGGCCGACTTCAATCTTCCTTAAATCACCCATCTTCTTGTGCCAAAGCTAGAGAAATCCGAGAgcaaattaaggggagaaagcTCGTTCTCGGTGTTGATGATATGGACATATTCAAAGGCATTGGTCTAAAGCTCTTGGCCATAGAACAACTCCTAGAGCAATGTCCACAACTACAAGGTGAGTTAGTAGTTGTCCAGATTGTGAATCCCCCAAGGAGTACTGGCAGAGATGTTGAGGAAACAAAGAAGGAGACATACCTTACAGCCAAAAGGATAAACGAAAGATTCGGTGTCGATGATTATGAACCTATCATTATCATTGATCATCCTATTCCTCCTTATGAAAAGGCAGCTTATTATGCTTTGGCAGAATGTTGCATTGTGAATGCTGTGAGGGATGGCATGaatttaattccatatatgtatgTTGTCTGTAGGCAAGGGACTCCAACAATGGATGAAGCCTTAGAAATCGATCCCGGGGTCCCTCATACAAGTGCTCTTGTTGTTTCTGAGTTCATAGGTTGCTCACCTTCTCTCAGTGGGGCTTTCAGGGTAAACCCTTGGGATGTTAATGCTGTGGCTGAAGCACTGAGTTTGGCCATCAACATGCCTAGTCAAGAGAAACAACTGAGGCATGCTAAGCACTATCAATATGTTAGCTCTCATGATGTGGCTTACTGGGCCAGAAGTTTCATGCAAGACCTCCAGCGTTCGAGTATTCATCAACAGAGCAACCTTTACTGGGGACTTGGCTTTGGTCTGAAATTCAGAGTATTATCACTTCCCCCAAGTTTTAGGAATCTGGACATGAAACAGGTTGTGTCTGCATATAAGAAGGCTAATCACAGGGCGATATTTCTGGACTATGATGGTACACTTGTTCCCAAAACTTCCTTTGGTAAACGCCCTAGTCCTGAAGTCATATCTCTTGTAAACATCCTTTGCAATGACCCTCAGAACACTGTTTTCATAGTAAGTGGCCGGGGGAAGACACCATTGAGCGAATGGTTCGATTCGTGTGAGGATCTTGGTATAGCAGCTGAGCATGGTTTGTTCATGAGGTGGGATAAATGTTCTAGATGGGAAACCAGTGATGTAGTCAAAGAAGATTTCAGCTGGAAAAGCATTGTGGAACCAGTGATGCAATCATATACCGAATTGACCGATGGCTCCTACATAGAGACGAAGGAGAGTGGTTTGGTATGGCATTATTGCCGAGCGGATTCGCGTTTCGGATCGTGGCAAGCCAAGGAGCTGTTGGATCAGCTTGAAAGTGTACTAGCAAATGAGCCTGCAATTGCTAGAAAGGGACAGTATATTGTTGAAGTGAAGCCACGGGGAATCAATAAAGGGCAAGTTATAAAGAAAGTTCTCTCTACCCTGACAATGAATGAAAACCCACCGGACTTTGTGCTGTGCATCGGCGATGACAGATCGGACGAGGACATGTTCGCGGCCTTATCTGACAAAGCTTACATGGCAGGGCTGTCTCTAGAGGGAGAGGTGTTTGCATGCACAGTTGGGCAGAAACCAAGCAAAGCTATGTACTACGTAGATGATATTAAGGATGTGAAGATGCTTCTTCAAGGACTCGTTCTTTTACAAGTGCCTAAAGAAGTAGACCGTGTGAGGTACGAAAGATTTGCTTGGAATGCAGATGAGTTCAACCTTTGA 3204 0.4185 MNDDEDRFNYLRERKAGENINEEIGFEIANGDEVGIGDEITEAETAGSVVGGTEFENNVEDEEEIGEGAEESDEDAEGDVHLHAILFADDGEIEIERVEEEGGEAGIEEDAVPSVDEFGFGIKDLQEISVQSLEFFVVGADKFFLSVPFQMYGYMYFMNWYDARRFIQPFSDVTLSSSRASDDKTEAFFLFFGSILQRPTLTAHILENSIQMAAKSYSDLLELSSQDKSNSPQVPRDISRVMSDPVIMFNNNDDASSSESGPKLIIVANFLPLKAEKDTSGRWRFSYDEDSIYLQLRDGIPSDTKVVYAGCLTVDVDASEEEQVSQELKVQFKCYPIFLPSDLKKNFYNGFCKQYLWPLFHSMLPMNPAYCNRYDGSLWRAYVNANKKFYLGIKKIFAPDDYVWVHDYHLMLLPTLLRMRFITIKLGFFLHSPFPSSEIFKTLPVRNEILRAFLNSDLIGFHTFDYARHFLSCCSRMFGLEYESKRGYIGIDYFGRTINIKILPAGIHIGRLQSSLNHPSSCAKAREIREQIKGRKLVLGVDDMDIFKGIGLKLLAIEQLLEQCPQLQGELVVVQIVNPPRSTGRDVEETKKETYLTAKRINERFGVDDYEPIIIIDHPIPPYEKAAYYALAECCIVNAVRDGMNLIPYMYVVCRQGTPTMDEALEIDPGVPHTSALVVSEFIGCSPSLSGAFRVNPWDVNAVAEALSLAINMPSQEKQLRHAKHYQYVSSHDVAYWARSFMQDLQRSSIHQQSNLYWGLGFGLKFRVLSLPPSFRNLDMKQVVSAYKKANHRAIFLDYDGTLVPKTSFGKRPSPEVISLVNILCNDPQNTVFIVSGRGKTPLSEWFDSCEDLGIAAEHGLFMRWDKCSRWETSDVVKEDFSWKSIVEPVMQSYTELTDGSYIETKESGLVWHYCRADSRFGSWQAKELLDQLESVLANEPAIARKGQYIVEVKPRGINKGQVIKKVLSTLTMNENPPDFVLCIGDDRSDEDMFAALSDKAYMAGLSLEGEVFACTVGQKPSKAMYYVDDIKDVKMLLQGLVLLQVPKEVDRVRYERFAWNADEFNL 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0812 1067 CDD HAD_TPP 794 1034 - -
Sto12g0812 1067 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 212 1043 - -
Sto12g0812 1067 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 794 999 IPR006379 -
Sto12g0812 1067 MobiDBLite consensus disorder prediction 43 76 - -
Sto12g0812 1067 MobiDBLite consensus disorder prediction 56 75 - -
Sto12g0812 1067 Pfam Glycosyltransferase family 20 263 746 IPR001830 GO:0003824|GO:0005992
Sto12g0812 1067 SUPERFAMILY HAD-like 793 1043 IPR036412 -
Sto12g0812 1067 Gene3D Glycogen Phosphorylase B; 255 513 - -
Sto12g0812 1067 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 212 1043 IPR001830 GO:0003824|GO:0005992
Sto12g0812 1067 CDD GT20_TPS 263 746 IPR001830 GO:0003824|GO:0005992
Sto12g0812 1067 Gene3D - 792 905 IPR023214 -
Sto12g0812 1067 Gene3D - 922 1054 IPR023214 -
Sto12g0812 1067 TIGRFAM T6PP: trehalose-phosphatase 791 1041 IPR003337 GO:0003824|GO:0005992
Sto12g0812 1067 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 263 747 - -
Sto12g0812 1067 Pfam Trehalose-phosphatase 796 1030 IPR003337 GO:0003824|GO:0005992
Sto12g0812 1067 Gene3D Glycogen Phosphorylase B; 514 730 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0812 Sto-Chr12 5104568 5114154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0812 212 1041 Trehalose Biosynthesis Gene Families AT1G23870 60.119 0.0 1059
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0812 K16055 - jre:108999247 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1437 3 10531854 10534700 Sto12g0812 12 5104568 5114154 CCT
Sto3g1437 3 10531854 10534700 Sto12g0812 12 5104568 5114154 ECH
Sto12g0812 12 5104568 5114154 Sto12g0812 12 5104568 5114154 ECH