Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0808 ATGGAGATTGTGATTTGTCTGATTCTACTCTTTCTGGGTATCGCTGTTTTGGTGTTGATTCATGTGTGCATGGTGTGGAGGGCTTTCGGGGGAGGAAGTGAAGAAcagagtggtggtggtggtggtggtgatgggaTCGTGAGAAAGAGAATGTGCAGAGAGGAGTTGAAGAATCTTCCTTGCTTTGAGTACAAGGAAGGAAAGAAAGGAGGAGATGGGAGCCTTGTGGATTGTGCTGTTTGTTTAGAGAGCTTCAAGGTTGGTGATTTATGCAGGTTTTTGCCTATGTGCAGACATACCTTCCATGTCCCCTGCATAGATTCCTGGATTCTCAACACACCCATTTGTCCTATTTGTCGAACCTGGGTTCATTTGATCCAACAAGTTGATGTTTCAGATAATGTTCGGATCCAAGTTGTATAG 423 0.4043 MEIVICLILLFLGIAVLVLIHVCMVWRAFGGGSEEQSGGGGGGDGIVRKRMCREELKNLPCFEYKEGKKGGDGSLVDCAVCLESFKVGDLCRFLPMCRHTFHVPCIDSWILNTPICPICRTWVHLIQQVDVSDNVRIQVV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0808 140 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Sto12g0808 140 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 129 - -
Sto12g0808 140 SUPERFAMILY RING/U-box 55 126 - -
Sto12g0808 140 Pfam Ring finger domain 77 120 IPR001841 -
Sto12g0808 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 124 IPR013083 -
Sto12g0808 140 SMART ring_2 78 119 IPR001841 -
Sto12g0808 140 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0808 Sto-Chr12 5089567 5089989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0808 56 140 C3H Transcription Factor Family AT5G17600 38.824 1.49e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0808 - - gmx:102662675 155.606