Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0804 ATGGCTATCAGAGGCGTCGATTTTAAATGGTACGATGGGTTTTTCTTGTCGATGCTCGCCACCAGCGTAGTTATTGTTGCAATTAATTGGAAGCGGTACCATTCTTGTACATACCCGTTGCACATATGGATTGTGGTTGACTACACTACTGTGTTCATCTTTCGGCTGATGATGTTTGTTGATAATGGACTCTCTGCTGGAATGGGTTTAGACTATGGGCGGCAGCAGAGATATGCACGCTTCTGTGGAAGAGTAGCAGTTCTTTCAGTCCTTGGTTTGCTTCTGTATCCATTTCTCTGGGCCTGGACTATAATTGGTACCTTGTGGTTCAGCAGTGCCAGGAACTGTTTGCCTGAAGAGGGCCAGAAATGGGGCTTCCTCATATGGTTACTTTTTAGCTACTGTGGACTGCTTTGCATTGCTTGCATATCACTAGGGAAGTGGTTGACACGAAGGCAAGCACATTTACTACGTGCTCAGCAGGGTATTCCTGTATCTGAATATGGAGTTCTGGTTGATATGATCCGAGTGCCTGATTGGGCATTTGAAGATGCAGGTCAGGAAACAAGGGGAATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTATCTAACTCCAGCGCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTTCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGCAGTGAATGCCCCATCTGCTTAGAAGAATTCCATGATGGGAATGAGGTTCGTGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGACTTAATGTGAAATGTCCACGGTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCGCTGTCCAATTTGCGTGCTGAGTCAGAAAGATCCTCTGCCAGTGTTGTGACAACAACCAGATATGTGAGAGGCCAACCTTCTAGTCAGAGTTACTTGTTGAGGTTACAGGATCTTCTCCGCCCTGTGCGTTCAGAAATTGCTGGGCCAGGTAATGACTTGGATAATGCTTTGGAACATGCTGAGAATGGTGGTGTACCAGTTATGGCCCGAGATGCATCATCTGGAAACCTAGCAGCTGCAGTTGAATGCACACCTGTCAGATTCTCCTCTGCACAGAATTAA 1143 0.4619 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFIFRLMMFVDNGLSAGMGLDYGRQQRYARFCGRVAVLSVLGLLLYPFLWAWTIIGTLWFSSARNCLPEEGQKWGFLIWLLFSYCGLLCIACISLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEDAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHDGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRAESERSSASVVTTTRYVRGQPSSQSYLLRLQDLLRPVRSEIAGPGNDLDNALEHAENGGVPVMARDASSGNLAAAVECTPVRFSSAQN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0804 380 Pfam Ring finger domain 234 276 IPR001841 -
Sto12g0804 380 SMART ring_2 235 275 IPR001841 -
Sto12g0804 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 - -
Sto12g0804 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Sto12g0804 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 IPR044793 GO:0004842|GO:0010182
Sto12g0804 380 SUPERFAMILY RING/U-box 217 284 - -
Sto12g0804 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Sto12g0804 380 CDD RING-H2_RNF111_like 234 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0804 Sto-Chr12 5068363 5071925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0804 58 360 C3H Transcription Factor Family AT3G47990 73.856 1.06e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0804 K16284 - gmx:100812016 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0804 12 5068363 5071925 Sto12g0804 12 5068363 5071925 ECH