Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0752 ATGCCTGGGTGCATCTTCGCGCCCTACTTCCCGCCGGAAGAGCCGCAGAAATTCGCCAACGTCCACAAGATCTTCGGCGCAAGCAACGTGACGAAGCTGCTCAACGAGCTGCTGCCTCACCAGAGAGAAGACGCGGTGAACTCGCTGGCCTACGAAGCAGAGGCGCGTGTGAGGGACCCCGTCTACGGCTGCGTGGGAGCCATCTCCTTCCTCCAGAGGCAAGTCCAGAAGCTGCAGAAGGAGCTCGACGCCGCTAATGCCGACCTTCTTCGCTTTGCCTGCACCACCACCAGCGACGTCATCCCTCCTCCTAATTCTACTACTACTAACATTAATTCCCTAATTCATCATCACCTCATTCAGAGGCCAAGGtccgcttcttcttcttcgctgTCAATATCATCTAATTCCTCCACTATGGACTATGTGCTCAATGCAAGGATTCatcccaataataataataatagtagtaaTAGTGAAGCAgcaggtggtggtggtggtggtggtggattcTACAGGCAGTATCCTACGCCTTATAACTATTCTCTCCCTTATACTATTCCCTGGGCTGATACCACTACTTCTGATGGTAACTATGAGGGAGCAGGAACAGCAGGTGCAGGTGCAGGTGCAGGTGCTGGTGGATGTGGAgGATGCCTTGTAGTTGAATAA 672 0.4673 MPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQKLQKELDAANADLLRFACTTTSDVIPPPNSTTTNINSLIHHHLIQRPRSASSSSLSISSNSSTMDYVLNARIHPNNNNNSSNSEAAGGGGGGGGFYRQYPTPYNYSLPYTIPWADTTTSDGNYEGAGTAGAGAGAGAGGCGGCLVVE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0752 223 ProSiteProfiles LOB domain profile. 1 89 IPR004883 -
Sto12g0752 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 137 - -
Sto12g0752 223 Coils Coil 68 95 - -
Sto12g0752 223 Pfam Lateral organ boundaries (LOB) domain 2 86 IPR004883 -
Sto12g0752 223 PANTHER ELONGATED PETIOLULE 1 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0752 Sto-Chr12 4712205 4713855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0752 1 98 AS2 family AT5G63090 87.755 4.69e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto12g0752 LOB 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0752 - - gmx:100800614 209.534
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1380 3 10034654 10036173 Sto12g0752 12 4712205 4713855 CCT
Sto3g1380 3 10034654 10036173 Sto12g0752 12 4712205 4713855 ECH
Sto12g0752 12 4712205 4713855 Sto12g0752 12 4712205 4713855 ECH