Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0749 ATGGGTCGCCATTCCTGTTGTGCAAAGCAAAAACTGAGGAAAGGCTTATGGTCTCCCGAAGAGGACGAGAAGCTTTTCAATCACATAACTAGATTCGGCGTTGGATGCTGGAGCTCCGTCCCTAAACTTGCTGGGCTTCAAAGATGCGGAAAGAGTTGTAGATTGCGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGCATGTTCTCCCAACAGGAGGAGGATCTCATTCTCACACTTCATCAAGTTCTCGGAAACAGGTGGGCTCAGATTGCTGCACAATTACCAGGAAGAACAGATAACGAGATTAAGAATTTCTGGAATTCGAGCCTCAAGAAGAAGCTGCTGAAGCTAGGGATTGACCCGACCACACACAAGCCACTTATGATCAAGCAGGAGGAGACGACATCAATGCCTCTAATCTCCGGCGGCTCCACCTCACCTTTTCTAATAACTCATCATTCCAATCAGATTGCTTCCTCAGATCATCATCAAATGTTGATGAAGAAGCCGGAATTAATGGAACCATTGATGTCGTCCTATTTTGAATTAGTGGATTCAACTAGTGCGACTGTGAGTGATTATCATGTTCATCAGAATCAGAGCATGTCAAGCTATGCCAACTTGTCGGCAATAACGGAAGTTTCAGATAACAACTCGGCTTCCAAAATCAGTTCAAGCAATAGCTCCAACGGGAGCGGTTATCatcataataataacaatactaGTAATGTGGGATTTTCGTCGTCGTCGTCTTGGGAGGGAGAGAATAAATTGGAGTTGGAGATAATGGACCCTTTCTTTCAGTTTCAACCTATCAAATCAGAGGAGGAATTGATGATCAATACGAGTTCTTCGTGGCAAATACAGGAGCAAGAGCAGCTTCTTCACACTCACACTTCGTCCATGGATTTCAATTCCTATCATCCGTTAACCACCACGTCACTCTCACAAGATCTAACGCCGCTGCCCGCCACTTACGATCATATGTATTCCATCCTATTCCACCAGATTTga 1020 0.4382 MGRHSCCAKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLILTLHQVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLLKLGIDPTTHKPLMIKQEETTSMPLISGGSTSPFLITHHSNQIASSDHHQMLMKKPELMEPLMSSYFELVDSTSATVSDYHVHQNQSMSSYANLSAITEVSDNNSASKISSSNSSNGSGYHHNNNNTSNVGFSSSSSWEGENKLELEIMDPFFQFQPIKSEEELMINTSSSWQIQEQEQLLHTHTSSMDFNSYHPLTTTSLSQDLTPLPATYDHMYSILFHQI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0749 339 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto12g0749 339 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Sto12g0749 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sto12g0749 339 PANTHER MYB DOMAIN PROTEIN 55 1 139 - -
Sto12g0749 339 PANTHER MYB DOMAIN PROTEIN 55 175 324 - -
Sto12g0749 339 CDD SANT 70 109 IPR001005 -
Sto12g0749 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto12g0749 339 PANTHER MYB-RELATED PROTEIN HV33-LIKE 175 324 - -
Sto12g0749 339 PANTHER MYB-RELATED PROTEIN HV33-LIKE 1 139 - -
Sto12g0749 339 CDD SANT 17 61 IPR001005 -
Sto12g0749 339 MobiDBLite consensus disorder prediction 220 252 - -
Sto12g0749 339 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto12g0749 339 Gene3D - 69 116 - -
Sto12g0749 339 SMART sant 13 63 IPR001005 -
Sto12g0749 339 SMART sant 66 114 IPR001005 -
Sto12g0749 339 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto12g0749 339 Gene3D - 11 67 - -
Sto12g0749 339 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0749 Sto-Chr12 4680191 4681407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0749 1 216 MYB Transcription Factor Family AT1G57560 55.046 8.94e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0749 Myb_DNA-binding 6.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0749 K09422 - twl:119983787 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0749 12 4680191 4681407 Sto12g0749 12 4680191 4681407 ECH