Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0746 ATGGCAACGAACTTTTTCCCACAACCTGCCGATTTCTCAACCATTTCAGCATCTTCCTCTTCCCAATTCCTACCCCCACACACAGAGATCAGAAAGAGGCATAGAGTTATTATTATGGAAGATGAAAATCACACACCATCAGAAGCCAAGGAATACTATTCTAAACCCTCATGGTGGCCAGAAACTACGCAGGCTAGTCACAATGGCATTCATATGACTAATGGCGCCTTAGATCATAATAACTCGAGAGAAATCATAACGCCTGAAGAAATTTCTGAGACTTTTGACATCTCTGGGGCTGCTGGTTTGAACCACTATTCTCGACAAGTGCTTTCATCAGAGATTGTGGAAATAGTTGAGGAAAGCAAGAGCATAACTAGTATTCAAGATAGAAGAGATAATGATGTATATGTAGCCGTTGGGAAGGATGATTTGGATGTAGTGAAATGGGCTCTTGATCATGCTCTTTCTCCTTCTGCTCGGATTTTCCTCATCCATGTCTCTCCTCCCATCACATTGATTCCTACGCCAGTTGGGAAGATATTAAGAAGCCAATTGAGTGCTGAACAAGTGAGGGTTTATATGAACGAAGAGAACAATAGGAGGAAGAATCTTCTGCAAAAGTACATCAAGTTGTGTACTGATGCCAAGATAACTGCAGATGCATTGCTTCTAGAGAGCAATGACATAGGCAAAGCAATTCTGGATCTGATATCTATACTTAACATCACCAACCTTGTAATTGGAATAAAAAAGCCACCCAACTCACCAAGGCGCAAGAACAAAGTGTCAGAAGCAGAGTTTGTGAAGAAAAATGCGCCAGAGTTCTGTGAAGTTACCTTGGTTTATAATGGCAGAAAGGTTGTGAACAACCAATACTTGCAAGGATTGGAATCCTTTGGCTCAGGGCATGTGAGCGCTGGCCACGGCCGTATCGGCAAGCACCGTAAGCACCCGGGAGGTCGAGGTAACGCCGGAGGCATGCACCACCACCGTATCCTCTTCGACAAATACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTCCACAAGCTACGAAACAAGTTCTATTGCCCCATTGTCAACATCGACAAGCTCTGGTCCTTGGTTCCTCAAGAATTGAAGGATAAAGCTTCCAAAGATAACGCTCCCATGATCGACGTCACTCAGTACGGCTACTTCAAGGTTTTGGGTAAGGGAGTTTTGCCTGAGAACAAGCCCGTGGTCGTGAAGGCCAAGCTTGTGTCCAAGATTGCCGAGAAGAAGATCAAGGAGGCTGGAGGAGCCGTTGTTCTCACTGCCTAA 1311 0.4485 MATNFFPQPADFSTISASSSSQFLPPHTEIRKRHRVIIMEDENHTPSEAKEYYSKPSWWPETTQASHNGIHMTNGALDHNNSREIITPEEISETFDISGAAGLNHYSRQVLSSEIVEIVEESKSITSIQDRRDNDVYVAVGKDDLDVVKWALDHALSPSARIFLIHVSPPITLIPTPVGKILRSQLSAEQVRVYMNEENNRRKNLLQKYIKLCTDAKITADALLLESNDIGKAILDLISILNITNLVIGIKKPPNSPRRKNKVSEAEFVKKNAPEFCEVTLVYNGRKVVNNQYLQGLESFGSGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLVPQELKDKASKDNAPMIDVTQYGYFKVLGKGVLPENKPVVVKAKLVSKIAEKKIKEAGGAVVLTA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0746 436 SUPERFAMILY Ribosomal proteins L15p and L18e 301 435 IPR036227 -
Sto12g0746 436 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 143 250 - -
Sto12g0746 436 Gene3D HUPs 136 266 IPR014729 -
Sto12g0746 436 CDD STK_N 136 285 - -
Sto12g0746 436 ProSitePatterns Ribosomal protein L15 signature. 397 429 IPR001196 GO:0003735|GO:0005840|GO:0006412
Sto12g0746 436 Gene3D - 348 436 - -
Sto12g0746 436 Hamap 50S ribosomal protein L15 [rplO]. 297 435 IPR030878 GO:0003735|GO:0006412|GO:0015934
Sto12g0746 436 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 319 433 IPR021131 -
Sto12g0746 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 105 298 - -
Sto12g0746 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 105 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0746 Sto-Chr12 4652181 4655398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0746 303 436 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 88.806 7.59e-86 257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1375 3 9980269 9980709 Sto12g0746 12 4652181 4655398 CCT
Sto12g0746 12 4652181 4655398 Sto12g0746 12 4652181 4655398 ECH