Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0738 ATGAGTGCTTCCATGGAGGTTACCCTTCAAGATCCCCCAATCGACCAAGTCTCCGATCATAATGGTGTCGCGGCCCAAGACTCAGCTCCTTCCCCTATGCTTTCTGAGCAGAAAGTTCTCGTCTCTGTTGAAGTATGTTTAAAACCTACGAGCACAGCTCGGATCGATGATGTCTGTTCAGCCGTCGTGAGGATGCTTGAAAACAGAAGTTTGAGCTATTCGGATGGGCCCATTCCTGTACCTCTTGACGAAGCGTTTCTTTTAGAAAACGTGCAAAGAATTAGTATTTGTGATACGGATGAGTGGATGAATAACCATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGTGAAGAAATTAGTACTGACGGCCAACTTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTGATATATGAATCTGGTCTCAAGCAAAGGTTGTTAAGATATGCAGCGAGCGCTTTGCTTTTTACGGAAAAGGGTGTTGATCAATTTCTAGTTTCATGGAACCGAATTATTCTTTTACATGGACCTCCTGGAACTGGAAAGACATCTTTATGTAAAGCCTTAGCACAAAAACTATCCATTCGATTCAATCAGAGATACCCACAGTGCCAGCTTATTGAAGTTAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAGCTCTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAGAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTGTCTGGTTCAGAGCCTTCAGATTCCATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAGTTCTAACTACATCTAACATAACTGCTGCTATCGATGTTGCTTTTGTTGATCGAGCTGATATCAAAGCGTACATTGGTCCTCCAACTCTCCAAGCTCGCTATGAGATACTCAGGTCGTGCTTGCAGGAACTGATGCGTACAGGGATCTTGACAGGTTTACAGGATTGTAAGAACATCACGCTTCCAAATTATGCTAGTGCGAAGGAGAGGTTGAACACACCTGAGAATCTTGAGGCCGCTACAGCCAATCAACTGTGTAAACAACTACTAGAAACCGCAGAGGCATGTGAGGGAATGAGCGGAAGGTCCTTGAGAAAGCTTCCATTCCTAGCCCATGCTGCTCTTGCTAATCCTTTTGATTGCAACCCTATTGAGTTCTTATGTACAATGATAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCCGACTGA 1371 0.4311 MSASMEVTLQDPPIDQVSDHNGVAAQDSAPSPMLSEQKVLVSVEVCLKPTSTARIDDVCSAVVRMLENRSLSYSDGPIPVPLDEAFLLENVQRISICDTDEWMNNHNILLFWQVKPVVHVFQLSEEGPCEEISTDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDQFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIVLTTSNITAAIDVAFVDRADIKAYIGPPTLQARYEILRSCLQELMRTGILTGLQDCKNITLPNYASAKERLNTPENLEAATANQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIEFLCTMIETAKRERSELPD 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0738 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 422 IPR027417 -
Sto12g0738 456 MobiDBLite consensus disorder prediction 1 30 - -
Sto12g0738 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524
Sto12g0738 456 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524
Sto12g0738 456 SMART AAA_5 190 342 IPR003593 -
Sto12g0738 456 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524|GO:0016887
Sto12g0738 456 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 34 453 IPR044539 -
Sto12g0738 456 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524|GO:0016887
Sto12g0738 456 Gene3D - 136 357 IPR027417 -
Sto12g0738 456 CDD AAA 192 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0738 Sto-Chr12 4616102 4621305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0738 194 360 Calmodulin-binding Proteins AT3G56690 30.178 1.41e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0738 K22399 - gmx:100795009 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0738 12 4616102 4621305 Sto12g0738 12 4616102 4621305 ECH