Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0733 ATGGCTTTAGCCGCCATGGGTAACAGTGCCCCCAAGAAATACGACGAAATCGACGCTGCCCCTGAAGAGAGAGCTCGTGGAATCACCATTAACACTGCCACCGTCGAGTACGAGACTGAGAATCGCCATTATGCTCATGTGGACTGTCCCGGTCACGCCGATTATGTCAAGAACATGATTACCGGCGCCGCCCAGATGGACGGAGCAATTCTGGTTGTTTCCGGCGCCGACGGGCCAATGCCGCAGACTAAGGAGCATATCCTTTTGGCCAAGCAAGTGGGTGTTCCCAATATGGTCGTGTTTCTGAACAAACAAGACCAGGTCGATGACGAGGAGCTTCTGCAGCTTGTGGAATTGGAGGTTCGTGAGCTTCTTTCGTCTTATGAGTTCCCAGGGGATGAAGTCCCCATTATCTCTGGTTCCGCTTTGCTAGCTTTGGAGGCATTGATGGCCAATCCTGCCATTAAACGAGGAGAAAACGAATGGGTCGACAAAATTTACGAACTCATGGATAATGTGGATAGCTACATACCAATTCCTCAGCGTCAAACTGAACTCCCCTTCTTGCTTGCCATTGAAGACGTGTTTTCCATCACAGGTCGTGGGACTGTGGCCACGGGTCGTGTTGAGAGAGGTACAATTAGGGTTGGAGAAACCGTTGATATAGTTGGTGTGAGGGAAACCAGAAACACCACCGTGACAGGGGTGGAAATGTTTCAGAAAATTCTTGATGAGGCCATGGCTGGTGATAATATTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACCCCACATACCAAGTTTGAAGCAATTGTGTATGTgctgaagaaggaagaaggaggaAGGCATTCACCATTCTTTGCTGGTTACAGGCCTCAGTTCTACATGAGGACTACTGATGTGACTGGCAAAGTGACTGCCATTATGAATGATAAGGATGAAGAGTCCAAGATGGTGATGCCTGGAGATCGTGTTAAGATGGTTGTTGAACTTATAGTGCCTGTGGCTTGTGAGCAAGGAATGAGGTTTGCCATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTTATTCAATCAATCATTGAGTGA 1101 0.4732 MALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDEVPIISGSALLALEALMANPAIKRGENEWVDKIYELMDNVDSYIPIPQRQTELPFLLAIEDVFSITGRGTVATGRVERGTIRVGETVDIVGVRETRNTTVTGVEMFQKILDEAMAGDNIDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0733 366 Gene3D - 3 180 IPR027417 -
Sto12g0733 366 Pfam Elongation factor Tu domain 2 202 252 IPR004161 GO:0005525
Sto12g0733 366 CDD EFTU_II 188 264 IPR033720 -
Sto12g0733 366 Pfam Elongation factor Tu GTP binding domain 13 178 IPR000795 GO:0003924|GO:0005525
Sto12g0733 366 PANTHER ELONGATION FACTOR TU 1 366 - -
Sto12g0733 366 TIGRFAM EF-Tu: translation elongation factor Tu 2 366 IPR004541 GO:0003746|GO:0005525|GO:0006414
Sto12g0733 366 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 265 365 IPR009001 -
Sto12g0733 366 Pfam Elongation factor Tu C-terminal domain 265 364 IPR004160 -
Sto12g0733 366 CDD EFTU_III 267 361 - -
Sto12g0733 366 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 181 IPR000795 GO:0003924|GO:0005525
Sto12g0733 366 SUPERFAMILY Translation proteins 182 268 IPR009000 -
Sto12g0733 366 PRINTS GTP-binding elongation factor signature 25 33 IPR000795 GO:0003924|GO:0005525
Sto12g0733 366 PRINTS GTP-binding elongation factor signature 45 55 IPR000795 GO:0003924|GO:0005525
Sto12g0733 366 PRINTS GTP-binding elongation factor signature 61 72 IPR000795 GO:0003924|GO:0005525
Sto12g0733 366 PRINTS GTP-binding elongation factor signature 98 107 IPR000795 GO:0003924|GO:0005525
Sto12g0733 366 Gene3D Translation factors 183 301 - -
Sto12g0733 366 PANTHER ELONGATION FACTOR TU-RELATED 1 366 - -
Sto12g0733 366 Gene3D Translation factors 305 365 - -
Sto12g0733 366 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 18 33 IPR031157 -
Sto12g0733 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 203 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0733 Sto-Chr12 4594539 4595669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0733 4 364 Eukaryotic Initiation Factors Gene Family AT5G60390 28.250 2.19e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0733 K02358 - rcu:8278277 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0733 12 4594539 4595669 Sto12g0733 12 4594539 4595669 ECH