Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0715 ATGTCTGTAACTTCTATCCCTACCATTAGGACCCTGGCAATGGCAGATTCATGCCTACTCTCTTCCCCTTCACTCTTCTCCAACAAAACCAAATACCCCAATTTCTCAATTCCCTCCAAACCCCTTAAACTTCAGCTCTTATGTTCCTACTCTTCACAATTTTTACCATCTCTGTCTCTCACATTTGTGGCACAGACATCGGATTGGGCCCAACAAGAAGAGGACAACACCGAAGCTCGCCTTTCGGATTGGGAGGCTGAGGGAGAAGACGCAGGGGTTGAAGGTAGCGAGGGCCAAGGTGAGGTTTTTGAAGAACCATCTGAAGATGCAAAAATCTTCGTCGGGAATTTGCCTTACAATGTTGATAGTCAAAAATTGGCCATGCTTTTTGAGCAATCGGGAACGGTGGAAATTGCTGAGGTAATTTATAACAGGGAGACTGACCAAAGTCGTGGGTTCGGATTTATAACGATGAGCACAGTCGAAGAAGCTGATAAGGCTGTCGAGAAGTTCAGTGGCTATGATTTAGATGGAAGACTATTGACTGTTAACAAGGCTGCTCCAAGAGGATCACGGCCTGAACGTCCACCTCGTACCTTCGAACCTGCTTTCAGAGTTTATGTTGGCAACTTGCCATGGGATGTTGATAATGCTCGCCTGGAGCAAATCTTTAGTGAACACGGTAAGGTTCTGAGTGCTCGGATGGTCTATGACAGACAGACTGGTCGATCACGCGGTTTTGGCTTTGTCACTATGGCTAGTGAGACTGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGAGTTTGGATGGGAGATCAATGAGAGTGAGTGTTGCTGAGGAAAGGGGCAGGCGTGGCTCCTTTTGA 870 0.4667 MSVTSIPTIRTLAMADSCLLSSPSLFSNKTKYPNFSIPSKPLKLQLLCSYSSQFLPSLSLTFVAQTSDWAQQEEDNTEARLSDWEAEGEDAGVEGSEGQGEVFEEPSEDAKIFVGNLPYNVDSQKLAMLFEQSGTVEIAEVIYNRETDQSRGFGFITMSTVEEADKAVEKFSGYDLDGRLLTVNKAAPRGSRPERPPRTFEPAFRVYVGNLPWDVDNARLEQIFSEHGKVLSARMVYDRQTGRSRGFGFVTMASETEMNDAIAALDGQSLDGRSMRVSVAEERGRRGSF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0715 289 CDD RRM_HP0827_like 111 188 - -
Sto12g0715 289 PANTHER OS02G0815200 PROTEIN 96 289 - -
Sto12g0715 289 PANTHER OS02G0815200 PROTEIN 1 85 - -
Sto12g0715 289 MobiDBLite consensus disorder prediction 73 87 - -
Sto12g0715 289 SUPERFAMILY RNA-binding domain, RBD 196 286 IPR035979 GO:0003676
Sto12g0715 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 181 IPR000504 GO:0003723
Sto12g0715 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 275 IPR000504 GO:0003723
Sto12g0715 289 CDD RRM_HP0827_like 205 281 - -
Sto12g0715 289 MobiDBLite consensus disorder prediction 71 99 - -
Sto12g0715 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Sto12g0715 289 SMART rrm1_1 111 184 IPR000504 GO:0003723
Sto12g0715 289 SMART rrm1_1 205 278 IPR000504 GO:0003723
Sto12g0715 289 Gene3D - 63 192 IPR012677 -
Sto12g0715 289 Gene3D - 193 288 IPR012677 -
Sto12g0715 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Sto12g0715 289 PANTHER RIBONUCLEOPROTEIN 1 85 - -
Sto12g0715 289 PANTHER RIBONUCLEOPROTEIN 96 289 - -
Sto12g0715 289 SUPERFAMILY RNA-binding domain, RBD 106 198 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0715 Sto-Chr12 4525434 4527514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0715 108 286 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 4.34e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0715 - - hbr:110672501 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1319 3 9580957 9583670 Sto12g0715 12 4525434 4527514 CCT
Sto3g1319 3 9580957 9583670 Sto12g0715 12 4525434 4527514 ECH
Sto12g0715 12 4525434 4527514 Sto12g0715 12 4525434 4527514 ECH