Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0705 ATGACCCTccctcttctcttctttctcttctctcttctcacCCCAACCCTCATTTCCTCCTCACCCCTCCAAGACCCTGAATTGGTTGTACAAGCGGTCAACAGGAAAATTAATGGTTCGATGGCTCGGAGGAGGAACTTGGGGTACCTCTCTTGTGGGAGCGGCAACCCCATTGACGATTGCTGGAGGTGTGACCCCAATTGGGAGCAGAACAGGCAGAGGCTAGCCGATTGCGCGATTGGGTTCGGGAAGAATGCGGTGGGGGGGACTCTCCGTTACGCCGTGATCCAAGACGAGCCCTTGTGGATCACATTCGCCAGAGACATGGTGATCAAGCTGAAGGAAGAGCTCATCATGAACTCCTTCAAGACCATCGACGGCCGAGGCGCGAGTGTGCACATTGCGGGTGGGCCCTGCATTACTATCCAGTACGTTACCAATATTATAATCCACGGTATAAACATCCACGACTGCAAGCAAGGGGGGAACGCTATGGTGAGATCCTCCCCACGGCACTACGGGTGGAGAACCGTATCGGACGGTGATGGCGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTGGACCATTGCTCTTTGTCTAACTGCAACGACGGGTTAATCGATGCGATTCATGGGTCCACCGCAATAACCATCTCTAACAATTACATGACTCACCACGACAAAGTCATGTTATTGGGTCACAGCGACTCCTATACCGACGACAAGAACATGCAAGTCACTATAGCTTTTAACCACTTTGGAGAAGGCCTCGTTCAAAGAATGCCAAGATGCAGGCTGGGATATTTCCATGTGGTCAACAATGACTACACCCATTGGGAAATGTATGCCATTGGTGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAATAGATTTGTTGCACCTGATGATAGATTCAGCAAAGAGGTGACGAAGCATGAGGATGCTCCAGAGAGTGAGTGGAAGAGTTGGAATTGGAGGTCAGAGGGGGACATGTTGGTAAACGGTGCGTTTTTCACGGCATCGGGTGCGGGAGCCTCGTCGAGCTATGCAAGGGCTTCGAGCTTGAGTGCGAGGCCATCCTCACTCGTGGGTTCCATAACGGTCACTGCGGGTGCACTAAGCTGTAAGAAAGGCTCCCGCTGCTGA 1149 0.5091 MTLPLLFFLFSLLTPTLISSSPLQDPELVVQAVNRKINGSMARRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAVGGTLRYAVIQDEPLWITFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTDDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKSWNWRSEGDMLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITVTAGALSCKKGSRC 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0705 382 Pfam Pectate lyase 115 299 IPR002022 -
Sto12g0705 382 SMART amb_all 108 305 IPR002022 -
Sto12g0705 382 PANTHER PECTATE LYASE 18-RELATED 89 379 IPR045032 GO:0030570
Sto12g0705 382 PANTHER PECTATE LYASE 18-RELATED 6 89 IPR045032 GO:0030570
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Sto12g0705 382 PRINTS Pollen allergen Amb family signature 353 376 IPR018082 -
Sto12g0705 382 Gene3D - 55 375 IPR012334 -
Sto12g0705 382 PANTHER PECTATE LYASE 6 89 - -
Sto12g0705 382 PANTHER PECTATE LYASE 89 379 - -
Sto12g0705 382 SUPERFAMILY Pectin lyase-like 40 376 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0705 Sto-Chr12 4465490 4467017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0705 1 382 Polysaccharide Lyase AT5G63180 76.355 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0705 K01728 - gmx:100101868 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0705 12 4465490 4467017 Sto12g0705 12 4465490 4467017 ECH