Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0703 ATGCCCGAACCGTTAGAAGCTCGAAATCATGTTTTGCCTCCAAAACCAGACTTGGGAGCTGAAGAGAGCTCCAAGATTCTTCAGCCTGCGAAGCTCGTCGTTTTGGCTGACCTCAACGTTGATCCTCCCGAAGCAGACGAGGATGATTCCCCCCATGTGCCTCCTCCAGAAGCTTCCAGATTGACAAATGATGAAAACAGTCCAGATAAGAGTATGTTGTCCAAAGAGACTGATGGCACTGAAGGTGAACCTAAAAAGTTGAATAAACCGGGTAAGTGCCGCTCCAGACTTAGTAAAACAGATTCTTCTGTTGATTGTGGAGCTGATGCAAATGGTGATCAGCATATTCAAGGGGTTGCATCCTCTCGGGAGGAAAAAGTTAGCAGCTTGAAGACGGGTTTGGTTCATGTTGCAAGGAAGATGCCCAAAAACGCTCATGCTCATTTTATACTTGGCCTAATGTACCAAAGGTTGGGCCAGCCTCAAAAGGCTGTATCAGCATATGAGAAGGCTGTAGAGATTTTACACCGGTATGAGGCTGAGATTAGTCGGCCAGAGTTGCTTACTTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCAGCAGAAAGTAGTTCAGATAAAGAACTTGAACCTCAAGAACTTGAAGAAATTCTTTCTAAAATGAAGGAGTCAATGCAAATGGATATCAGACAGGCAGCTGTATGGAATACACTAGGATTTATACTTCTTAAAACTGGTCGCGTGCTGAGTGCTATCACAGTATTATCTTCATTATTGGCTATTGCACCAGACAACTATGATTGCCTGGGAAATCTTGGGATTTCTTACCTTCAAAGTGGCAATTTGGAATTATCTGCAAAATGTTTCCAAGAGTTGATTCTAAAAGATCAAAATCATCCTGCAGCCTTGATCAACTATGCTGCCCTTCTTTTGTGTAAATATGCTTCTGTTGTAACAGGTGCTGGTGCAAGTGCTGCTGAAGGTGCTTCTGTAGATCAGGTTGCAGCTGTTAATGCTGCAAAGGAATGTTTGCTAGCTGCAATAAAAGCAGATGCCAAATCAGGACATGTCTGGGCAAATCTTGCAAATGCATTTTACTTGTGTGGTGATCATAGAAGTTCCAGCAAGTGCTTGGAGAAGGCAGCAAAACTGGATCCCAATTGCATGTCTACTCGTTATGCTGTTGCTGTCCATAGAATAAAGGATGCTGAAAGATCTCAAGATCCTAGTGATCAGCTTTCTTGGGCTGGAAATGAGATGGCGTCTATAATAAGAGATGGAGATTCATCCTTGGTTGAGCTTCCAGTAGCATGGGCTGGGCTTGCCATGGTTCATAAGGCTCAGCATGAGATAGCAGCAGGTTTTGAAACTGAACAGAACAAGCTGATGGAAGTTGAAGAGCGTGCTGTTTGCATTTTAAAGCAGGCTGTAGCAGAAGATCCAGATGATGCTGTGCACTGGCACCAACTTGGTCTTCATAGTCTGTGTACTCGGCAATTCAAAACATCACAAAAGTACCTCAAAGCTGCAGTCGTCCGTGACAAGGATTGCAGCTATGCATGGTCAAATCTAGGTGTTTCACTTCAACTCTCAGAAGAACCATCAAAAGCTGAAGAAGTATACAAGCAAGCATTGGCATTGGCAACAACACAACAATCACATGCTATATTATGCAACCTTGGAAATCTCTATCGGCAGCAAAAACAATATCAACGTGCCAAGGCAATGTTTACGAAGTCTCTTGAACTACGGCCAGGCTATGCTCCTGCATATAACAACCTGGGTCTTGTTTTTGTCGCTGAGGGTCTATGGGAAGAGGCCAAGTATTGTTTTGACAAGGCCCTCCAAGCAGATCCATTACTGGATGCAGCAAAGTCTAACGGCATTAAGGCCCTTACCATATACTTGAGCTCTACTCTTGACAGCTACAGCTCATTAGACATCTTGCCTGTTCCGAAACCCCAAGAAATGGAAGCTACACTCTTATTGTGCTTCCAAGTGTCCAGTGGCAACTACATACGGTTACAGggtttgaaatGTGGAGGGAGAATGGATCCCTCTGAATCCGATAAAACCGCTGTTTCGAGCTCCGTTGTTGATGCAGAAGTGGGGTTTCAGTCACCTCCTACTTCCCCTAATTCCTATCACGATCCTGAAACGTCAGATCTCAATCACCAGGCTCAGCCCGATTCGCTTCATGAGGAGCTTCAGGACAAGTTGGATTTGAAGGATAAGGATGAAGGCGGCGAAACGGAGAAGAAAGATTCAGAAGTTGATGATGCTACTAAAGCTGGTGCTGACGAATCTGAGAAGAAAGAAGGGTTCGATGAAGACAACTGGAATTgggatgagaatgagaatgtgaacgACGGTGACAACGATAAGCTGGGTATAGATGATGTAATTGTCGGTGATGAAGTGGAGAACAAGGATGAGGAAAGCAGCGGTAGAACTCACCAGTATCCAGTGAGGCCTGAAGCTGAAGATTGTGCGTTCTATCTTAAGACTGGAACTTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCTCTTAAGAGGAAAAATCAGTATTATCTGAAGTCAGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAACCACACAAGAGGGAAATGTTCAGCCGCTCCAATTTTAGAGCTTAATTTTCTCGGCTTGCCTATTCGTATGGGAGAGAAAGAGTGCCCCTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCACAGTGTAAATTTAATCATCCTGATCCTACAGTTGTTGGAGGAAGTGATCCTACTTCAGGATATGGTAATGGTGGGGCCATTCCATTACAAGGTGTATCACAGCCATCTGTGCCCTCTTGGTCTTCTCCAAGGGCATTAAATGAAACTGCTCCATTTGTGCCAATGATGCTTCCGCCTAGTCAAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATATCAGGCACCTGTGTACCTGTCTGAGAGGAGTATGCATACACCATCTACATTTGTTGTGAATAACCCAGCAATCGAAACAAATGCTTATATGCATCATCAAAAGCAGATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTACTTCTTAAAAACTGGGAATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGTATTGCAAGACCTCCATGCATCCTCAGTGACAAGGGCCTGCCCTTGAGACCTGATCAAAATGTCTGCTCACACTATAGTCGCTATGGAATATGCAAATTTGGACCATCTTGTAAGTTTGACCATCCAATAAATCCATTGCCGTCAACTATGTCTGGACTTGATCAGCAAGACTCCTACACGGACTCTGCCAGTATGGAAGTGGCTGAGATGGCTGGAAATGGAGGTGCAAGTGATGCTGCAATTCAGCAGCCTGTGTAA 3450 0.4365 MPEPLEARNHVLPPKPDLGAEESSKILQPAKLVVLADLNVDPPEADEDDSPHVPPPEASRLTNDENSPDKSMLSKETDGTEGEPKKLNKPGKCRSRLSKTDSSVDCGADANGDQHIQGVASSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAVEILHRYEAEISRPELLTLVQIHHAQCLILESSAESSSDKELEPQELEEILSKMKESMQMDIRQAAVWNTLGFILLKTGRVLSAITVLSSLLAIAPDNYDCLGNLGISYLQSGNLELSAKCFQELILKDQNHPAALINYAALLLCKYASVVTGAGASAAEGASVDQVAAVNAAKECLLAAIKADAKSGHVWANLANAFYLCGDHRSSSKCLEKAAKLDPNCMSTRYAVAVHRIKDAERSQDPSDQLSWAGNEMASIIRDGDSSLVELPVAWAGLAMVHKAQHEIAAGFETEQNKLMEVEERAVCILKQAVAEDPDDAVHWHQLGLHSLCTRQFKTSQKYLKAAVVRDKDCSYAWSNLGVSLQLSEEPSKAEEVYKQALALATTQQSHAILCNLGNLYRQQKQYQRAKAMFTKSLELRPGYAPAYNNLGLVFVAEGLWEEAKYCFDKALQADPLLDAAKSNGIKALTIYLSSTLDSYSSLDILPVPKPQEMEATLLLCFQVSSGNYIRLQGLKCGGRMDPSESDKTAVSSSVVDAEVGFQSPPTSPNSYHDPETSDLNHQAQPDSLHEELQDKLDLKDKDEGGETEKKDSEVDDATKAGADESEKKEGFDEDNWNWDENENVNDGDNDKLGIDDVIVGDEVENKDEESSGRTHQYPVRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQYYLKSGGCKFGKACKFNHTRGKCSAAPILELNFLGLPIRMGEKECPYYMRTGSCKFGAQCKFNHPDPTVVGGSDPTSGYGNGGAIPLQGVSQPSVPSWSSPRALNETAPFVPMMLPPSQGVSPQSSEWNGYQAPVYLSERSMHTPSTFVVNNPAIETNAYMHHQKQMQVEEFPERPGEPECSYFLKTGNCKFKSNCKFHHPKNRIARPPCILSDKGLPLRPDQNVCSHYSRYGICKFGPSCKFDHPINPLPSTMSGLDQQDSYTDSASMEVAEMAGNGGASDAAIQQPV 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0703 1149 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 18 641 - -
Sto12g0703 1149 SMART tpr_5 359 392 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 270 303 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 558 591 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 488 521 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 145 178 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 592 625 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 236 269 IPR019734 GO:0005515
Sto12g0703 1149 SMART tpr_5 522 555 IPR019734 GO:0005515
Sto12g0703 1149 SUPERFAMILY CCCH zinc finger 1078 1106 IPR036855 GO:0046872
Sto12g0703 1149 ProSiteProfiles TPR repeat profile. 558 591 IPR019734 GO:0005515
Sto12g0703 1149 ProSiteProfiles TPR repeat region circular profile. 592 623 - -
Sto12g0703 1149 Gene3D Tetratricopeptide repeat domain 130 192 IPR011990 GO:0005515
Sto12g0703 1149 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 18 641 - -
Sto12g0703 1149 ProSiteProfiles TPR repeat profile. 236 269 IPR019734 GO:0005515
Sto12g0703 1149 SMART c3hfinal6 1035 1062 IPR000571 GO:0046872
Sto12g0703 1149 SMART c3hfinal6 858 880 IPR000571 GO:0046872
Sto12g0703 1149 SMART c3hfinal6 901 926 IPR000571 GO:0046872
Sto12g0703 1149 SMART c3hfinal6 828 855 IPR000571 GO:0046872
Sto12g0703 1149 SMART c3hfinal6 1080 1107 IPR000571 GO:0046872
Sto12g0703 1149 SUPERFAMILY CCCH zinc finger 898 927 IPR036855 GO:0046872
Sto12g0703 1149 Gene3D Tetratricopeptide repeat domain 212 319 IPR011990 GO:0005515
Sto12g0703 1149 Pfam Tetratricopeptide repeat 524 588 - -
Sto12g0703 1149 MobiDBLite consensus disorder prediction 688 801 - -
Sto12g0703 1149 SUPERFAMILY CCCH zinc finger 827 857 IPR036855 GO:0046872
Sto12g0703 1149 ProSiteProfiles TPR repeat profile. 145 178 IPR019734 GO:0005515
Sto12g0703 1149 SUPERFAMILY CCCH zinc finger 1040 1064 IPR036855 GO:0046872
Sto12g0703 1149 Gene3D Tetratricopeptide repeat domain 557 634 IPR011990 GO:0005515
Sto12g0703 1149 SUPERFAMILY TPR-like 471 623 IPR011990 GO:0005515
Sto12g0703 1149 Pfam Tetratricopeptide repeat 360 392 IPR019734 GO:0005515
Sto12g0703 1149 Pfam Tetratricopeptide repeat 145 174 IPR019734 GO:0005515
Sto12g0703 1149 ProSiteProfiles TPR repeat profile. 359 392 IPR019734 GO:0005515
Sto12g0703 1149 MobiDBLite consensus disorder prediction 1 25 - -
Sto12g0703 1149 ProSiteProfiles TPR repeat profile. 592 625 IPR019734 GO:0005515
Sto12g0703 1149 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 901 925 IPR000571 GO:0046872
Sto12g0703 1149 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1037 1062 IPR000571 GO:0046872
Sto12g0703 1149 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 832 854 IPR000571 GO:0046872
Sto12g0703 1149 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1083 1106 IPR000571 GO:0046872
Sto12g0703 1149 ProSiteProfiles Zinc finger C3H1-type profile. 828 856 IPR000571 GO:0046872
Sto12g0703 1149 Gene3D Tetratricopeptide repeat domain 472 556 IPR011990 GO:0005515
Sto12g0703 1149 ProSiteProfiles TPR repeat region circular profile. 145 174 - -
Sto12g0703 1149 MobiDBLite consensus disorder prediction 693 731 - -
Sto12g0703 1149 Gene3D Tetratricopeptide repeat domain 332 426 IPR011990 GO:0005515
Sto12g0703 1149 Gene3D - 796 857 - -
Sto12g0703 1149 MobiDBLite consensus disorder prediction 69 99 - -
Sto12g0703 1149 ProSiteProfiles Zinc finger C3H1-type profile. 1080 1108 IPR000571 GO:0046872
Sto12g0703 1149 MobiDBLite consensus disorder prediction 732 782 - -
Sto12g0703 1149 Gene3D - 1037 1114 - -
Sto12g0703 1149 Gene3D - 858 933 - -
Sto12g0703 1149 ProSiteProfiles Zinc finger C3H1-type profile. 860 881 IPR000571 GO:0046872
Sto12g0703 1149 ProSiteProfiles Zinc finger C3H1-type profile. 899 927 IPR000571 GO:0046872
Sto12g0703 1149 ProSiteProfiles Zinc finger C3H1-type profile. 1035 1063 IPR000571 GO:0046872
Sto12g0703 1149 MobiDBLite consensus disorder prediction 37 112 - -
Sto12g0703 1149 SUPERFAMILY TPR-like 141 395 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0703 Sto-Chr12 4446823 4459117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0703 1031 1114 C2H2 Transcription Factor Family AT3G02830 50.588 5.06e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g0703 TPR_12 6.1e-09 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0703 - - adu:107478871 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1303 3 9458737 9462933 Sto12g0703 12 4446823 4459117 ECH
Sto12g0703 12 4446823 4459117 Sto12g0703 12 4446823 4459117 ECH