Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0692 ATGGCGGAACCTGACGAAACGGTGAAATCTGCCGATAACCAACAACCCGAGCAAGTTTGCAGTTTCTTTAGAAAGCCtgttaatagaaaaaatatcaGAAAACGCACTATAGataatgaagatgatgatggcgGCTCGGAAAGGGAAAGCTCTATGTTAAGCAATCAAAGAAAGACCATCAAAGCTGATAATAAATTGTACTTTTCGACTGGGCCCTCTAAAAGCTCCAGATCATCTGAACCCAACGAACAATCTGAAAGGAAAGGGTTTCAGTTTGAATCTTCAAAAGAGATTCAAGTTCAACATGATAGCAGAGCAACAGCGATATTAGAAACTGAAACTGATTTTTCTAGAGATGCCCGAGCTATACGTGAGAGAGCTTTGAAGCAAGCGGAGGAGAAGTTGAAGGGAAAAGACACAAGTAGTTCTGGAGACCAAAAATTGTATAAGGGCATCAATAGTTACACAGATTACAAGGCCGGGTTTCGTAGAGAGCAAACAATCGCGAGTGAGAAAGCTGGTGGGTCACATGGGCCTCTCAGGGCTTCAGCACATATAAGAGTGTCAGCCAGATTTGATTATCAGCCGGACATATGTAAGGATTATAAGGAGACTGGTTACTGTGGCTATGGTGATTCGTGTAAGTTTATGCATGACCGAGGTGATTATAAGTCTGGGTGGCAGTTAGAGAAAGAATGGGATGAAGCAGAGAAAGCGAGGAGGATGAGATTAGCTGCCGGGGAGGATCCAAATGAGGAGGGTGATGAGTTGACtggtgaagaagatgatgatgatgcattaCCATTTGCTTGCTTTATTTGCAGGGAGCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTTTGCGAGCATTGTGCATTGAAGCATCATACCAAGAATAAGAAGTGTTTTGTATGTAATCAGCCCACTCTTGGCATTTTTAACACAGCTCACGAGATACGCAAGAAGATGGCTGAAGAGGGTAAATAA 996 0.4056 MAEPDETVKSADNQQPEQVCSFFRKPVNRKNIRKRTIDNEDDDGGSERESSMLSNQRKTIKADNKLYFSTGPSKSSRSSEPNEQSERKGFQFESSKEIQVQHDSRATAILETETDFSRDARAIRERALKQAEEKLKGKDTSSSGDQKLYKGINSYTDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARRMRLAAGEDPNEEGDELTGEEDDDDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHTKNKKCFVCNQPTLGIFNTAHEIRKKMAEEGK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0692 331 MobiDBLite consensus disorder prediction 32 48 - -
Sto12g0692 331 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Sto12g0692 331 ProSiteProfiles Zinc finger C3H1-type profile. 193 221 IPR000571 GO:0046872
Sto12g0692 331 SMART c3hfinal6 193 220 IPR000571 GO:0046872
Sto12g0692 331 MobiDBLite consensus disorder prediction 1 112 - -
Sto12g0692 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 194 219 IPR000571 GO:0046872
Sto12g0692 331 SUPERFAMILY CCCH zinc finger 192 224 IPR036855 GO:0046872
Sto12g0692 331 SMART ring_2 271 308 IPR001841 -
Sto12g0692 331 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
Sto12g0692 331 MobiDBLite consensus disorder prediction 240 262 - -
Sto12g0692 331 Gene3D - 191 225 - -
Sto12g0692 331 SUPERFAMILY RING/U-box 270 314 - -
Sto12g0692 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 11 330 - -
Sto12g0692 331 MobiDBLite consensus disorder prediction 49 79 - -
Sto12g0692 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 328 IPR013083 -
Sto12g0692 331 CDD RING-HC_RNF113A_B 269 309 - -
Sto12g0692 331 Pfam Zinc finger, C3HC4 type (RING finger) 270 312 - -
Sto12g0692 331 PANTHER ZINC FINGER PROTEIN 183 11 330 IPR039971 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0692 Sto-Chr12 4401087 4402755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0692 10 329 C2H2 Transcription Factor Family AT1G01350 71.562 2.50e-168 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g0692 zf-C3HC4_3 8.2e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0692 K13127 - gmx:100817146 549.28