Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0678 ATGGGTGTGGACTATTACAAGATCTTGCAGGTTGATAAGAATGCTAAGGAAGACGACTTGAAGAAGGCTTACAGGAAGCTTGCCATGAAATGGCATCCTGATAAGAATCCAAATAACAAGAAGGAAGCTGAAGCTAAATTCAAGCAAATTTCTGAAGCCTATGACGTTTTAAGTGATTCTCAGAAGAGAGCTATCTATGATCAATACGGTGAAGAGGGTTTGAAGGGCCAGGTTCCGCCTCCCGATGCCGGTGGGCCCGGCGGAGGAGCTTCTTACTTTTCGACGGGAGATGGGCCGACATCGTTTCGCTTCAATCCCCGAAACGCCGATGATATATTTGCCGAGTTTTTCGGTTTTTCGAGTCCGTTCGGAGGCGGTGGTGGTCATGGAGGGATGAGGTCGAGGTTCTCTGGTGGGATGTTTGGTGATGACATGTTTGGATCTTttggggaaggaggaggaatccaCATGAATACAGGTGTTCCTCGCAAAGCTCCTTCTATTGAGAACAGATTGCCTTGCAGTCTCGAAGACTTGTATAAAGGAACtacaaagaagatgaagatCTCTAGAGAAATTGCTGATGCCAGTGGCAAAACCATGCCAGTGGAGGAGATCTTAACTATTACTATCAAGCCTGGCTGGAAGAAGGGCACAAAAATAACCTTCCCTGAGAAGGGAAACGAGCAGCCGAATGTGACACCCGCGGACCTTGTTTTCATTGTTGACGAAAAGCCTCACAGTGTCTTCACACGTGACGGAAACGATCTGATTGTGACACAGAAGATATCTCTCGCAGAGGCCTTGACTGGTTATACAGTGCAGCTCACTACCCTGGATGGAAGAAACTTGACCATACCAATCAACAATGTCATACATCCAAACTATGAGGAGGTTGTTCCAAGAGAAGGAATGCCACTTCAAAAGGATCCAACGAAGAAGGGGAACTTGAGGATAAAGTTCAACATTAAGTTCCCAACTCGTCTCACTTCAGAGCAGAAAGCAGGAATCAGGAAACTCTTGGGTGCTTCACCCTGA 1038 0.4489 MGVDYYKILQVDKNAKEDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDSQKRAIYDQYGEEGLKGQVPPPDAGGPGGGASYFSTGDGPTSFRFNPRNADDIFAEFFGFSSPFGGGGGHGGMRSRFSGGMFGDDMFGSFGEGGGIHMNTGVPRKAPSIENRLPCSLEDLYKGTTKKMKISREIADASGKTMPVEEILTITIKPGWKKGTKITFPEKGNEQPNVTPADLVFIVDEKPHSVFTRDGNDLIVTQKISLAEALTGYTVQLTTLDGRNLTIPINNVIHPNYEEVVPREGMPLQKDPTKKGNLRIKFNIKFPTRLTSEQKAGIRKLLGASP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0678 345 Gene3D - 167 245 - -
Sto12g0678 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 162 257 IPR008971 GO:0006457|GO:0051082
Sto12g0678 345 CDD DnaJ_C 166 329 - -
Sto12g0678 345 Pfam DnaJ C terminal domain 168 326 IPR002939 -
Sto12g0678 345 CDD DnaJ 4 59 IPR001623 -
Sto12g0678 345 Gene3D DnaJ domain 3 151 IPR036869 -
Sto12g0678 345 SMART dnaj_3 3 62 IPR001623 -
Sto12g0678 345 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 342 - -
Sto12g0678 345 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Sto12g0678 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 249 335 IPR008971 GO:0006457|GO:0051082
Sto12g0678 345 SUPERFAMILY Chaperone J-domain 3 75 IPR036869 -
Sto12g0678 345 Gene3D - 247 327 - -
Sto12g0678 345 Pfam DnaJ domain 4 67 IPR001623 -
Sto12g0678 345 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 342 - -
Sto12g0678 345 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Sto12g0678 345 MobiDBLite consensus disorder prediction 72 97 - -
Sto12g0678 345 PRINTS DnaJ domain signature 6 24 IPR001623 -
Sto12g0678 345 PRINTS DnaJ domain signature 24 39 IPR001623 -
Sto12g0678 345 PRINTS DnaJ domain signature 42 62 IPR001623 -
Sto12g0678 345 PRINTS DnaJ domain signature 62 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0678 Sto-Chr12 4322315 4324428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0678 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 9.41e-09 55.1